Team:USTC Software/detail

From 2010.igem.org

(Difference between revisions)
(New page: An overview of species list is provided: center 0:E_coli: E.Coli cell; 1:IPTG: IPTG in flask; 2:DNA: initial transformed plasmids; 3:IPTG: IPTG i...)
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[[Image:USTCS_graph1.JPG|600px|thumb|center]]
[[Image:USTCS_graph1.JPG|600px|thumb|center]]
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where each species with its specific identifier has its own meaning:
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0:E_coli: E.Coli cell;
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*0:E_coli: E.Coli cell;
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1:IPTG: IPTG in flask;
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*1:IPTG: IPTG in flask;
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2:DNA: initial transformed plasmids;
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*2:DNA: initial transformed plasmids;
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3:IPTG: IPTG in E.Coli due to diffusion;
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*3:IPTG: IPTG in E.Coli due to diffusion;
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4:RNA: mRNA of tetR;
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*4:RNA: mRNA of tetR;
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5:RNA: mRNA of lacI;
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*5:RNA: mRNA of lacI;
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6:RNA: mRNA of cIlam;
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*6:RNA: mRNA of cIlam;
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7:tetR154: tetR protein;
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*7:tetR154: tetR protein;
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8:lacI153: lacI protein;
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*8:lacI153: lacI protein;
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9:cIlam156: lacI protein;
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*9:cIlam156: lacI protein;
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10:(tetR154)2: tetR dimer;
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*10:(tetR154)2: tetR dimer;
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11:(lacI153)2: lacI dimer;
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*11:(lacI153)2: lacI dimer;
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12:(cIlam156)2: cIlam dimer;
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*12:(cIlam156)2: cIlam dimer;
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13:DNA;(tetR154)2: complex of tetR dimer binding to pTet gene of plasmid DNA;
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*13:DNA;(tetR154)2: complex of tetR dimer binding to pTet gene of plasmid DNA;
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14:(lacI153)4; lacI tetramer;
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*14:(lacI153)4; lacI tetramer;
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15:DNA;(cIlam156)2: complex of cIlam dimer binding to pCI gene of plasmid DNA;
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*15:DNA;(cIlam156)2: complex of cIlam dimer binding to pCI gene of plasmid DNA;
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16:DNA;(cIlam156)2;(tetR154)2: complex of plasmid of DNA with both pCI and pTet genes bound with cIlam dimer and tetR dimer;
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*16:DNA;(cIlam156)2;(tetR154)2: complex of plasmid of DNA with both pCI and pTet genes bound with cIlam dimer and tetR dimer;
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17:DNA;(lacI153)4: complex of LacI tetramer binding to pLacI gene plasmid DNA;
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*17:DNA;(lacI153)4: complex of LacI tetramer binding to pLacI gene plasmid DNA;
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18:DNA;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pLacI and pTet genes bound with LacI tetramer and tetR dimer, respectively;
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*18:DNA;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pLacI and pTet genes bound with LacI tetramer and tetR dimer, respectively;
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19:IPTG;(lacI153)4: complex of LacI tetramer binding to pLacI gene of plasmid DNA;
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*19:IPTG;(lacI153)4: complex of LacI tetramer binding to pLacI gene of plasmid DNA;
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20:DNA;(cIlam156)2;(lacI153)4: complex of plasmid DNA with both pCI and placI genes bound with cIlam dimer and lacI tetramer, respectively;
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*20:DNA;(cIlam156)2;(lacI153)4: complex of plasmid DNA with both pCI and placI genes bound with cIlam dimer and lacI tetramer, respectively;
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21:DNA;(cIlam156)2;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pCI, placI and pTet genes bound with cIlam dimer, lacI tetramer and tetR dimer, respectively;
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*21:DNA;(cIlam156)2;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pCI, placI and pTet genes bound with cIlam dimer, lacI tetramer and tetR dimer, respectively;
Since there are 153 reactions in total, we only provide a screenshot (we strongly recommend users to run our example to learn more details about automatic modeling):
Since there are 153 reactions in total, we only provide a screenshot (we strongly recommend users to run our example to learn more details about automatic modeling):
[[Image:USTCS_graph2.JPG|600px|thumb|center]]
[[Image:USTCS_graph2.JPG|600px|thumb|center]]

Revision as of 15:28, 27 October 2010

An overview of species list is provided:

USTCS graph1.JPG

where each species with its specific identifier has its own meaning:

  • 0:E_coli: E.Coli cell;
  • 1:IPTG: IPTG in flask;
  • 2:DNA: initial transformed plasmids;
  • 3:IPTG: IPTG in E.Coli due to diffusion;
  • 4:RNA: mRNA of tetR;
  • 5:RNA: mRNA of lacI;
  • 6:RNA: mRNA of cIlam;
  • 7:tetR154: tetR protein;
  • 8:lacI153: lacI protein;
  • 9:cIlam156: lacI protein;
  • 10:(tetR154)2: tetR dimer;
  • 11:(lacI153)2: lacI dimer;
  • 12:(cIlam156)2: cIlam dimer;
  • 13:DNA;(tetR154)2: complex of tetR dimer binding to pTet gene of plasmid DNA;
  • 14:(lacI153)4; lacI tetramer;
  • 15:DNA;(cIlam156)2: complex of cIlam dimer binding to pCI gene of plasmid DNA;
  • 16:DNA;(cIlam156)2;(tetR154)2: complex of plasmid of DNA with both pCI and pTet genes bound with cIlam dimer and tetR dimer;
  • 17:DNA;(lacI153)4: complex of LacI tetramer binding to pLacI gene plasmid DNA;
  • 18:DNA;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pLacI and pTet genes bound with LacI tetramer and tetR dimer, respectively;
  • 19:IPTG;(lacI153)4: complex of LacI tetramer binding to pLacI gene of plasmid DNA;
  • 20:DNA;(cIlam156)2;(lacI153)4: complex of plasmid DNA with both pCI and placI genes bound with cIlam dimer and lacI tetramer, respectively;
  • 21:DNA;(cIlam156)2;(lacI153)4;(tetR154)2: complex of plasmid DNA with both pCI, placI and pTet genes bound with cIlam dimer, lacI tetramer and tetR dimer, respectively;

Since there are 153 reactions in total, we only provide a screenshot (we strongly recommend users to run our example to learn more details about automatic modeling):

USTCS graph2.JPG