http://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&feed=atom&action=historyTeam:UCSF/Notes/Bootcamp - Revision history2024-03-28T18:21:46ZRevision history for this page on the wikiMediaWiki 1.16.5http://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=207417&oldid=prevRyanliang: /* SUMMER BOOTCAMP */2010-10-28T03:28:02Z<p><span class="autocomment">SUMMER BOOTCAMP</span></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>=== '''<del class="diffchange diffchange-inline">SUMMER BOOTCAMP</del>''' ===</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>=== '''<ins class="diffchange diffchange-inline">Summer Bootcamp</ins>''' ===</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Before the summer Bootcamp Raquel Gomes and the super buddies (students from UCSF iGEM 2009) came to Lincoln High School for three afterschool sessions where they taught us about synthetic biology, immunology, UCSF iGEM 2009 project and techniques the super buddies were learning in the lab. We also were given papers to read and discuss. As soon as our school year was over a two week bootcamp started at UCSF.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Before the summer Bootcamp Raquel Gomes and the super buddies (students from UCSF iGEM 2009) came to Lincoln High School for three afterschool sessions where they taught us about synthetic biology, immunology, UCSF iGEM 2009 project and techniques the super buddies were learning in the lab. We also were given papers to read and discuss. As soon as our school year was over a two week bootcamp started at UCSF.</div></td></tr>
</table>Ryanlianghttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=198724&oldid=prevRyanliang at 22:19, 27 October 20102010-10-27T22:19:43Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Template:UCSF/LeftEnd}}</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>{{Template:UCSF/LeftEnd}}</div></td></tr>
</table>Ryanlianghttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=198617&oldid=prevRyanliang: /* Week 2: June 21- 25 */2010-10-27T22:15:00Z<p><span class="autocomment">Week 2: June 21- 25</span></p>
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</table>Ryanlianghttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=198449&oldid=prevRyanliang: /* Week 2: June 21- 25 */2010-10-27T22:08:08Z<p><span class="autocomment">Week 2: June 21- 25</span></p>
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</table>Ryanlianghttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=184802&oldid=prevPrmagomes at 14:47, 27 October 20102010-10-27T14:47:35Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>D. Small G proteins, GTPases and ATPases</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>D. Small G proteins, GTPases and ATPases</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td></tr>
</table>Prmagomeshttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=184781&oldid=prevPrmagomes: /* Week 1: June 14-18 */2010-10-27T14:47:02Z<p><span class="autocomment">Week 1: June 14-18</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>C. Introduction to topics covered during bootcamp and instructors </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>C. Introduction to topics covered during bootcamp and instructors </div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td></tr>
</table>Prmagomeshttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=184734&oldid=prevPrmagomes: /* Week 2: June 21- 25 */2010-10-27T14:45:55Z<p><span class="autocomment">Week 2: June 21- 25</span></p>
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</table>Prmagomeshttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=184722&oldid=prevPrmagomes at 14:45, 27 October 20102010-10-27T14:45:39Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Before the summer Bootcamp Raquel Gomes and the super buddies (students from UCSF iGEM 2009) came to Lincoln High School for three afterschool sessions where they taught us about synthetic biology, immunology, UCSF iGEM 2009 project and techniques the super buddies were learning in the lab. We also were given papers to read and discuss. As soon as our school year was over a two week bootcamp started at UCSF.</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Before the summer Bootcamp Raquel Gomes and the super buddies (students from UCSF iGEM 2009) came to Lincoln High School for three afterschool sessions where they taught us about synthetic biology, immunology, UCSF iGEM 2009 project and techniques the super buddies were learning in the lab. We also were given papers to read and discuss. As soon as our school year was over a two week bootcamp started at UCSF.</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 1: June 14-18'''====</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 1: June 14-18'''====</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>D. Small G proteins, GTPases and ATPases</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>D. Small G proteins, GTPases and ATPases</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''Logic Gates''' - <del class="diffchange diffchange-inline">By </del>Reid Williams</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''Logic Gates''' - <ins class="diffchange diffchange-inline">by </ins>Reid Williams</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. The independent parts of proteins can be rearranged to produce a protein that acts differently. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. The independent parts of proteins can be rearranged to produce a protein that acts differently. </div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''Wrap-up and Intro to Team challenge''' - <del class="diffchange diffchange-inline">By </del>Raquel Gomes and James Onuffer</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''Wrap-up and Intro to Team challenge''' - <ins class="diffchange diffchange-inline">by </ins>Raquel Gomes and James Onuffer</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. Summary of everything learned during bootcamp</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. Summary of everything learned during bootcamp</div></td></tr>
</table>Prmagomeshttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=184690&oldid=prevPrmagomes: /* Week 2: June 21- 25 */2010-10-27T14:45:03Z<p><span class="autocomment">Week 2: June 21- 25</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">'''Logic Gates''' - By Reid Williams</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">A. The independent parts of proteins can be rearranged to produce a protein that acts differently. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">B. These new proteins can be used to screen for the many different types of cancer and make the immune cells respond in a certain way.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">C. Application: Cancer cells vary greatly in their surface protein expression (markers). We can use these markers as inputs that act as prerequisites for a certain immune cell action (i.e. killing and not killing).</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">'''Wrap-up and Intro to Team challenge''' - By Raquel Gomes and James Onuffer</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">A. Summary of everything learned during bootcamp</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;">B. Intro to challenges</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Boot camp continues onto week two. This week, our lectures focused on more of the creative aspect of synthetic biology. We learned about modularity and how parts can be put together into devices. We also studied Boolean logic and the various types of logic gates like AND or NOT gates. </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>Boot camp continues onto week two. This week, our lectures focused on more of the creative aspect of synthetic biology. We learned about modularity and how parts can be put together into devices. We also studied Boolean logic and the various types of logic gates like AND or NOT gates. </div></td></tr>
</table>Prmagomeshttp://2010.igem.org/wiki/index.php?title=Team:UCSF/Notes/Bootcamp&diff=184639&oldid=prevPrmagomes: /* Week 1: June 14-18 */2010-10-27T14:43:29Z<p><span class="autocomment">Week 1: June 14-18</span></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Intro to Cancer and Synthetic Biology''' - By Raquel Gomes</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>'''Intro to Cancer and Synthetic Biology''' - By Raquel Gomes</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. How cancer develops</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. How cancer develops</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>B. Synthetic Biology design</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>B. Synthetic Biology design</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>C. Introduction to topics covered during bootcamp and instructors </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>C. Introduction to topics covered during bootcamp and instructors </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>D. Main rules to work in lab</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>D. Main rules to work in lab</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''Cell Death''' - Daniel Hostetter</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''Cell Death''' - <ins class="diffchange diffchange-inline">by </ins>Daniel Hostetter</div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. The activation of the killing process results in...</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>A. The activation of the killing process results in...</div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>'''<del class="diffchange diffchange-inline">Logic Gates</del>'''</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>'''<ins class="diffchange diffchange-inline">Intracellular signaling</ins>''' <ins class="diffchange diffchange-inline">- by David Pincus</ins></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>A. The <del class="diffchange diffchange-inline">independent parts </del>of <del class="diffchange diffchange-inline">proteins can be rearranged to produce </del>a <del class="diffchange diffchange-inline">protein that acts differently</del>. </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>A. The <ins class="diffchange diffchange-inline">inside </ins>of <ins class="diffchange diffchange-inline">the cell is like </ins>a <ins class="diffchange diffchange-inline">Rube Goldberg device</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"> </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">B</ins>. <ins class="diffchange diffchange-inline">Writers, Erasers and Readers - kinases, phosphatases and effectors</ins></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">B. These new proteins can be used to screen for the many different types of cancer and make the immune cells respond in a certain way</del>.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">C</ins>. <ins class="diffchange diffchange-inline">Second messengers</ins></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">C</del>. <del class="diffchange diffchange-inline">Application: Cancer cells vary greatly in their surface protein expression (markers). We can use these markers as inputs that act as prerequisites for a certain immune cell action (i.e. killing </del>and <del class="diffchange diffchange-inline">not killing).</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">D</ins>. <ins class="diffchange diffchange-inline">Small G proteins, GTPases </ins>and <ins class="diffchange diffchange-inline">ATPases</ins></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>===='''Week 2: June 21- 25'''==== </div></td></tr>
</table>Prmagomes