Population counter

Quorum Sensing

Andrew, BG: Design principles of the bacterial quorum sensing gene networks. Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2009, 1:45–60

A, BG, D, JT, T, L: Systems analysis of a quorum sensing network: design constraints imposed by the functional requirements, network topology and kinetic constants. Bio Systems 2006, 83:178–187

Subhayu, B, Yoram, G, Cynthia, HC, Frances, HA, Ron, W: A synthetic multicellular system for programmed pattern formation. Nature 2005, 434:1130–1134

Quorum sensing in Escherichia coli and Salmonella. {[Int} J Med Microbiol. 2006] - {PubMed} result.

Microfluidics

Alex, G, Caroline, L, {HoJung}, C, J, KC, Yann, SD, Ann, MS, Andre, L: A microfluidic chemostat for experiments with bacterial and yeast cells. Nature Methods 2005, 2:685–689

Dmitri, V, Scott, C, Jeff, H, Lev, ST: Biomechanical ordering of dense cell populations. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:15346–15351

Modelling

T.Danino, O.Mondragon-Palomino, L.Tsimring, J.Hasty: A synchronized quorum of genetic clocks. Nature 2009, 463:326 - 330

T.Lu, D.Volfson, L.Tsimring, J. Hasty: Cellular growth and division in the Gillespie algorithm. Systems biology, IEEE proceedings 2004, 1:121 - 128

D.Gillespie: A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. The Journal of Computational Physics 1976, 22:403 - 434

D.Gillespie: Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry 1977, 81:2340 - 2361

S.Lampoudi, D.Gillespie, L.Petzold: The multinomial simulation algorithm for discrete stochastic simulation of reaction-diffusion systems. 2009

R.Bustin, H.Messer: An equivalent Markov model for Gillespie’s stochastic simulation algorithm for biochemical systems. 2006

W.H.Press, S.A.Teukolsky, W.T.Vetterling, B.P.Flannery: Numerical recipes in C. Cambridge University Press, 1992.