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Team:Newcastle/modelling
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[[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | [[Image:Newcastle CellDesigner Filamentous.png|150px|Model]] | ||
| - | === | + | ==Urease== |
| + | |||
| + | ... | ||
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| + | ===Flux balance analysis=== | ||
| + | |||
| + | ... | ||
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| + | ===Biochemical network in SBML=== | ||
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| + | We wrote a computational model of our system in SBML and simulated it in Copasi to help us verify our parts had the expected behaviour before we built them. | ||
| + | |||
| + | [[Image:ModelrocFsr1.png|400px]] | ||
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| + | Downloads: | ||
| + | *[[Media:Newcastle_urease.mod.txt|SBML-shorthand]] | ||
| + | *[[Media:Newcastle_urease.xml.txt|SBML]] | ||
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[[Image:ModelrocFsr1.png|400px]] | [[Image:ModelrocFsr1.png|400px]] | ||
{{Team:Newcastle/footer}} | {{Team:Newcastle/footer}} | ||
Revision as of 20:14, 25 October 2010
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Contents |
Modelling
In order to understand the behaviour of our parts, we computationally modelled them by encoding biochemical networks in [http://sbml.org SBML] and simulating them using [http://www.copasi.org COPASI].
Urease
...
Flux balance analysis
...
Biochemical network in SBML
We wrote a computational model of our system in SBML and simulated it in Copasi to help us verify our parts had the expected behaviour before we built them.
Downloads:
   
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