Team:Newcastle/12 July 2010

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(Colony PCR)
(Colony PCR)
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'''Note''' We used 1 minute of extension time because the size of lacI is 1.4kb.
'''Note''' We used 1 minute of extension time because the size of lacI is 1.4kb.
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====Results====
'''Note''' There are 2 possible reasons for red colonies formed:  
'''Note''' There are 2 possible reasons for red colonies formed:  

Revision as of 11:54, 3 September 2010

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12 July 2010

Contents

LacI BioBrick Construction

P7120450.JPG

Aims

To use PCR to extract lacI (promoter, ribosome-binding site (RBS) & coding sequence (CDS)) from plasmid pMutin4 and ligate into vector pSB1AT3 in front of red fluorescent protein (RFP).

Summary:

  1. Colony PCR
  2. Streak plate
  3. Minipreps

Materials

  • PCR reagents
  • LB plus ampicillin plates

Protocols

Colony PCR

7 colonies were selected for screening by colony PCR and Streak plating.


Colony PCR is a rapid way to check if the desired sequence is now present in the vector. Unfortunately none of the colonies had the desired sequence integrated into the vector.


P7120427.JPG


The quantities for the PCR are as follows:

Please refer to PCR. The melting temperature, Tm, of this experiment is 54°C.

Note We used 1 minute of extension time because the size of lacI is 1.4kb.

Results

Note There are 2 possible reasons for red colonies formed:

  1. partial digest - rejoins without insert
  2. with insert

We need to tell the difference between the two.

Spread Plates

P7120408.JPG
P7120409.JPG
P7120418.JPG

Overnight culture

The seven colonies that grew on the plates were cultured overnight. The protocol for growing an overnight culture was followed.

Tommorrow

We are going to take one of the colonies that have worked and possibly a whole plasmid prep.

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