Team:METU Turkey Software

From 2010.igem.org

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    <td><img name="MetuTurkeySoftwareLogo" src="http://2010.igem.org/wiki/images/7/74/MetuTurkeySoftwareLogo.png" width="196" height="153" border="0" id="MetuTurkeySoftwareLogo" alt="MetuTurkeySoftware Logo" /></td>
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      <p style="text-decoration: underline; text-align: center; font-weight: bold; font-size: 16px;">Project Description</p>
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      <p>As the field of Synthetic Biology is on the rise, iGEM is growing up very fast and the number of parts in the parts registry is increasing with the addition of more complex parts each day. After facing some difficulty while running our algorithms on the parts registry, the need for standardization of parts entry was apparent. </p>
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        By following the basics of professional software development approaches, we are aiming to overcome the issues that can be observed while building extensive and complex databases. Entity Relationship Model (ER) diagrams has been applied in order to design an extensible database. We are currently developing Software Requirements Specification (SRS) to define the requirements for each part in the registry and building blocks of the software such as algorithm, user interface, web server etc. Software Design Description (SDD) approach will be helping us while developing the final software and design art elements of the software that will deliver the database requirements . Our Quality Plan (QP) will point out the risks of the designed software and help us with the risk management.These professional software development approaches are helping us to communicate with a common language between the Software oriented and Biology oriented members in the team. We are using graph theoretic modeling to visualize the relations between iGEM Parts and to standardize the represantation of the parts as much as possible by graph theoretical methods. It will help us when we try to find input output relations between the parts. Furthermore, our program will be able to provide alternative pathways to construct the most reliable Biobrick devices with respect to given inputs and expected outputs as a Biobrick Guide.    </p>
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!align="center"|[[Team:METU_Turkey_Software|Home]]
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!align="center"|[[Team:METU_Turkey_Software/Team|Team]]
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!align="center"|[http://igem.org/Team.cgi?year=2010&team_name=METU_Turkey_Software Official Team Profile]
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        <p><span>METU</span> <strong>Turkey Software</strong></p>
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        </div> <!--header ends-->
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        <a href="http://2010.igem.org/Team:METU_Turkey_Software" id="logo" title="BioGuide" class="replace"><span>BioGuide</span></a>
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        <li class="active"><a href="http://2010.igem.org/Team:METU_Turkey_Software">HOME</a></li>
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        <li><a href="http://2010.igem.org/Team:METU_Turkey_Software/Team">TEAM</a></li>
 +
        <li><a href="http://2010.igem.org/Team:METU_Turkey_Software/Project">PROJECT</a>
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            <span>
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Project">Introduction</a> |
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                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Motivation">Motivation</a> |
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                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Scope">Scope</a> |
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                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Mathematicalmodel">Mathematical Model</a> |
 +
                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Design">Design</a> |
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                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Algorithm">Algorithm</a>
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            </span>
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      </li>
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<li><a href="http://2010.igem.org/Team:METU_Turkey_Software/Notebook">NOTEBOOK</a></li>
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        <li><a href="http://2010.igem.org/Team:METU_Turkey_Software/Download">DOWNLOAD</a>
 +
            <span>
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Download">Executable Software</a> |
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Code">Code</a> |
 +
              <a href="http://2010.igem.org/Team:METU_Turkey_Software/Supportingtools">Supporting Tools</a> |
 +
              <a href="http://2010.igem.org/Team:METU_Turkey_Software/Contact">Contact</a> |
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                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Userguide">User Guide</a>
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            </span>
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      </li>
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        <li><a href="http://2010.igem.org/Team:METU_Turkey_Software/Miscellaneous">MISCELLANEOUS</a>
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            <span>
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Collaboration">Collaboration</a> |
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Humanpractices">Human Practices</a> |
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Safety">Safety</a> |
 +
                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Futureplan">Future Plan</a>       
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            </span>
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        </li>     
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<div id="content">
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            <div class="text">
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                <h3>Abstract..</h3>
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                    <p><img src="http://igem.org/wiki/images/b/b2/Bioguide.jpg" alt="" />As the field of Synthetic Biology is on the rise, iGEM is growing up very  fast and the number of parts in the parts registry is increasing with the  addition of more complex parts each day. After facing some difficulty while  running our algorithms on the parts registry, the need for standardization of  parts entry was apparent. <a href="http://2010.igem.org/Team:METU_Turkey_Software/Project" class="continue">Read More...</a></p>                                       
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                </div> <!--text ends-->
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                <div class="text alternative">
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                <h3>Our Team..</h3>
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                    <p><img src="http://igem.org/wiki/images/b/b2/Bioguide.jpg" alt="" />METU Turkey Software is a team consists of advisors and students of Middle East Technical University which are prepared for competing in iGem 2010. <a href="http://2010.igem.org/Team:METU_Turkey_Software/Team" class="continue">Read More...</a></p>
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              </div> <!--text ends-->
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                <div class="text">
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                <h3>Download It..</h3>
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                    <p><img src="http://igem.org/wiki/images/f/f1/Download.png" alt="" />Try BioGuide in your computer, and feel its power! Suggest or leave your opinion about BioGuide. <a href="http://2010.igem.org/Team:METU_Turkey_Software/Download" class="continue">Read More...</a></p>                     
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                <h3>Sponsors</h3>
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                </div> <!--heading ends-->
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                <ul class="sponsors">
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            <li>&nbsp;</li>
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            </ul>
 +
               
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                <div class="heading">
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                <h3>Sitemap</h3>
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                </div> <!--heading ends-->
 +
                <ul>
 +
            <a href="http://2010.igem.org/Team:METU_Turkey_Software"><li><span>Home</span></li></a>
 +
                        <a href="http://2010.igem.org/Team:METU_Turkey_Software/Team"><li><span>Team</span></li></a>
 +
                        <a href="http://2010.igem.org/Team:METU_Turkey_Software/Project"><li><span>Project</span></li></a>
 +
                       
 +
                            <a href="http://2010.igem.org/Team:METU_Turkey_Software/Project"><li>- Introduction</li></a>
 +
                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Motivation"><li>- Motivation</li></a>
 +
                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Scope"><li>- Scope</li></a>
 +
                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Mathematicalmodel"><li>- Mathematical Model</li></a>
 +
                                <a href="design.html"><li>- Design</li></a>
 +
                                <a href="algorithm.html"><li>- Algorithm</li></a>
 +
                         
 +
                      <a href="http://2010.igem.org/Team:METU_Turkey_Software/Notebook"><li><span>Notebook</span></li></a>
 +
                        <a href="http://2010.igem.org/Team:METU_Turkey_Software/Download"><li><span>Download</span></li></a>
 +
                       
 +
                                <a href="http://2010.igem.org/Team:METU_Turkey_Software/Download"><li>- Executable Software</li></a>
 +
                                <a href="code.html"><li>- Code</li></a>
 +
                                <a href="supportingtools.html"><li>- Supporting Tools</li></a>
 +
                                <a href="contact.html"><li>- Contact</li></a>
 +
                                <a href="userguide.html"><li>- User Guide</li></a>
 +
                                                               
 +
                        <a href="http://2010.igem.org/Team:METU_Turkey_Software/Miscellaneous"><li><span>Miscellaneous</span></li> </a>
 +
                       
 +
                                <a href="collaboration.html"><li>- Collaboration</li></a>
 +
                                <a href="humanpractices.html"><li>- Human Practices</li></a>
 +
                                <a href="safety.html"><li>- Safety</li></a>
 +
                                <a href="futureplan.html"><li>- Future Plan</li></a>                                         
 +
        </ul>                             
 +
          </div> <!--right column ends-->
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        </div> <!--content ends-->
 +
</div> <!--wrapper ends-->
 +
</body>
</html>
</html>
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Revision as of 10:25, 7 September 2010

Home

Abstract..

As the field of Synthetic Biology is on the rise, iGEM is growing up very fast and the number of parts in the parts registry is increasing with the addition of more complex parts each day. After facing some difficulty while running our algorithms on the parts registry, the need for standardization of parts entry was apparent. Read More...

Our Team..

METU Turkey Software is a team consists of advisors and students of Middle East Technical University which are prepared for competing in iGem 2010. Read More...

Download It..

Try BioGuide in your computer, and feel its power! Suggest or leave your opinion about BioGuide. Read More...