Team:LMU-Munich/ProSearch/Schedule
From 2010.igem.org
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The cell line used in this project is the human embryonic kidney cell line 293T . | The cell line used in this project is the human embryonic kidney cell line 293T . | ||
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The [http://www.ncbi.nlm.nih.gov/sites/entrez?db=ncbisearch NCBI GEO] and [http://www.ebi.ac.uk/arrayexpress/browse.html ArrayExpress] databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained: | The [http://www.ncbi.nlm.nih.gov/sites/entrez?db=ncbisearch NCBI GEO] and [http://www.ebi.ac.uk/arrayexpress/browse.html ArrayExpress] databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained: | ||
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[1] Reference one Geo | [1] Reference one Geo | ||
[1] Reference one Geo | [1] Reference one Geo | ||
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+ | In order to understand gene regulation of apoptosis regulated genes we used the Transcriptional Regulatory Element Database [http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=searchPromForm (TRED)] to extract known promoters and the [http://string-db.org/ STRING] database for known interactions between genes and their transcription factors. | ||
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Revision as of 10:28, 26 September 2010
The cell line used in this project is the human embryonic kidney cell line 293T .
The NCBI GEO and ArrayExpress databases were extensively searched for environmental conditions leading to apoptosis in 293T cells and genes differentially expressed under these conditions. The following data was obtained:
In order to understand gene regulation of apoptosis regulated genes we used the Transcriptional Regulatory Element Database (TRED) to extract known promoters and the STRING database for known interactions between genes and their transcription factors.
Cell Line
Databases Search
Environmental Condition (EV)
#genes selectively expressed in this EV
Reference
Conduritol B Epoxide treatment
57
[1]
Gammaherpesvirus
103
[2]
HIV integration
1
[3]
HLTV-1 p30
2291
[4]
Hypoxia
2
[5]
RCAS-beta-cateinS37A
55
[6]
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo
[1] Reference one Geo