Team:Kyoto/Project/Goal B


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====Initiation of cell lysis====
====Initiation of cell lysis====
====Checkpoint whether cell lysis occurs====
====Checkpoint whethe cell lysis occurs===
====Checkpoint whethe cell lysis occurs===

Revision as of 19:22, 26 October 2010


Goal B: Characterization of λ Lysis cassette


λ Lysis cassette is a gene that causes cell lysis. In previous iGEM, some teams evaluated the lytic activity of λ Lysis cassette qualitatively. However, when we considered λ Lysis cassette not only as a device of cell lysis but as a device of cell death, we must study about λ Lysis cassette more quantitatively. For example, we must study about when cells die, how many cells die, and the relationship between them and the activity of their promoter.



To characterize the lytic activity of Λ Lysis cassette quantitatively, we regulate the gene expression of λ Lysis cassette by a lactose promoter, R0011, which we characterized quantitatively by RPU in GoalA. To repress the basal expression of λ Lysis cassette without IPTG as possible, we used pSB4K5, a low copy vector, as a plasmid backbone and used KRX as a host cell. Needless to say, we characterized R0011 in the same experimental condition. For more detailed explanation of the characterization of R0011, go Goal A


Experiment 1 Mesurement of the lytic activity in overnight cultures

We picked out three colonies for the device and cultivated in supplemented M9 media in various concentration of IPTG. After 16h, 18h,20h incubation, we measured A550 of the cultures.


Fig.1 A550 of 18h cultures in various concentration of IPTG. When the concentration of IPTG is from 0.01mM to 0.02mM, A550 decrease mildy. When the concentration of IPTG is from 0.02mM to 0.05mM, A550 decrease dramatically. When the concentration of IPTG is over 0.05mM, A550 is under 0.3 and doesn't change largely.


Fig.2 Fig.2 is the figures that the horizontal axis of Fig 1 is converted to RPU using the characterization of R0011 りんくよろ. RPU is the absolute activity of promoter, so Fig2 shows the relationship between the lytic activity of λ Lysis cassette and the induction of λ Lysis cassette.

Experiment 2 Measurement of lytic activity with time



Equilibrium state of cell lysis

Initiation of cell lysis

====Checkpoint whethe cell lysis occurs===