Team:Johns Hopkins

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[[Image:IGEM_Banner_jpeg.jpg|960px|center|JHU.]]
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You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
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<li><a href="https://2010.igem.org/Team:Johns_Hopkins">Home</a></li>
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<li><a href="https://2010.igem.org/Team:Johns_Hopkins/Team">Team</a></li>
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<li><a href="https://2010.igem.org/Team:Johns_Hopkins/Project">Project</a></li>
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[[Image:Johns Hopkins logo.png|left|frame|Johns Hopkins University Seal]]
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<big>'''Genetically engineered ''Saccharomyces cerevisiae'' that is responsive to voltage signals at a transcriptional level. '''</big>
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Using our specifically designed CRZ1 binding elements in tandem with fluorescent reporter genes, we characterized calcineurin-CRZ1 mediated calcium response pathway in yeast. In doing so we have taken the first step in creating an interface between cellular systems and computers by allowing cells to respond to voltage signals, the language of computers.
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<big>'''Possible applications:'''</big>
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*We see large scale applications in synthetic biology, for the integration of computer controlled voltage signals into gene expression control. We want to create a system where genes can be turned on and off with voltage signals that be delivered at precise and arbitrary intervals by computers, without having to deal with a hundred different and potentially costly chemical reagents. In effect, we want to make biology more easily engineerable.
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*We are looking into inducing the URA3 gene (required for uracil synthesis) in a URA3 null mutant to create yeast cells whose growth is dependent on a voltage signal. For example, this might take the form of a system whereby an SMS "text" message could be sent to a computer, which would stop electrostimulating cells, turning off uracil synthesis.  This way, a text message could effectively "turn off" cells without the need to even come into the lab!
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*We imagine that a voltage activated transcriptional response might be very useful in cardiovascular research.  For example, it might be used to model arrhythmias in cardiac tissue, because using our system of voltage (or calcium influx) activated transcription it might be possible to weed out cells displaying action potentials, like live muscle cells that are contracting. We hypothesize this could be done by causing a selectable transcriptional response to the calcium influx of the action potential. 
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*We believe that the concept of voltage controlled transcription in yeast might have large industrial applications, specifically in the field of fermentation. By designing yeast that are taken in and out of the growth cycle by simple voltage signals we would be able to dynamically control, for example, yeast population density and hence fermentation rates in bioreactors. In theory, however, this voltage control could be tuned to modulate nearly any cellular behavior in any organism with a nucleus.
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|You can write a background of your team here. Give us a background of your team, the members, etc. Or tell us more about something of your choosing.
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|[[Image:Johns_Hopkins_logo.png|200px|right|frame]]
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''Tell us more about your project.  Give us background.  Use this as the abstract of your project.  Be descriptive but concise (1-2 paragraphs)''
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|[[Image:Johns_Hopkins_team.png|right|frame|Your team picture]]
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|align="center"|[[Team:Johns_Hopkins | Team Example]]
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<big>'''Our Accomplishments'''</big><br>
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'''We have...'''
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*Extended previous work on voltage sensitivity (Valencia 2009) in ''S. cerevisiae'', bringing the response from the biochemical domain into the transcriptional.
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*Constructed a library of 7 voltage-activated yeast upstream activation sequences with varying sensitivity.
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*Characterized two full voltage-activated promoters for yeast.
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*Developed a model to describe the transcriptional response to voltage of our system.
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*Successfully leveraged post-translational modification machinery, namely de-phosphorylation of Crz1 by calcineurin, to initiate a transcriptional response.
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*Fabricated a highly accurate microfluidic electro-stimulation setup using gold electrodes on a silicone wafer and are currently in the process of refining the fabrication technique.
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!align="center"|[[Team:Johns_Hopkins|Home]]
 
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!align="center"|[[Team:Johns_Hopkins/Team|Team]]
 
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!align="center"|[https://igem.org/Team.cgi?year=2010&team_name=Johns_Hopkins Official Team Profile]
 
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!align="center"|[[Team:Johns_Hopkins/Project|Project]]
 
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!align="center"|[[Team:Johns_Hopkins/Parts|Parts Submitted to the Registry]]
 
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!align="center"|[[Team:Johns_Hopkins/Modeling|Modeling]]
 
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!align="center"|[[Team:Johns_Hopkins/Notebook|Notebook]]
 
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!align="center"|[[Team:Johns_Hopkins/Safety|Safety]]
 
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<big>'''Team:'''</big> We are a team of eleven undergraduate students deeply interested in synthetic biology. We hail from a variety of disciplines including, chemistry, biology and engineering. We’re a fresh new team with varying levels of experience united by our passion for science.<br>
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[[Image:IGEM_Team_Photo.jpg|650px|center|thumb| JHU iGEM 2010]]

Latest revision as of 23:27, 27 October 2010

JHU.

Johns Hopkins University Seal

Genetically engineered Saccharomyces cerevisiae that is responsive to voltage signals at a transcriptional level.

Using our specifically designed CRZ1 binding elements in tandem with fluorescent reporter genes, we characterized calcineurin-CRZ1 mediated calcium response pathway in yeast. In doing so we have taken the first step in creating an interface between cellular systems and computers by allowing cells to respond to voltage signals, the language of computers.

Possible applications:

  • We see large scale applications in synthetic biology, for the integration of computer controlled voltage signals into gene expression control. We want to create a system where genes can be turned on and off with voltage signals that be delivered at precise and arbitrary intervals by computers, without having to deal with a hundred different and potentially costly chemical reagents. In effect, we want to make biology more easily engineerable.
  • We are looking into inducing the URA3 gene (required for uracil synthesis) in a URA3 null mutant to create yeast cells whose growth is dependent on a voltage signal. For example, this might take the form of a system whereby an SMS "text" message could be sent to a computer, which would stop electrostimulating cells, turning off uracil synthesis. This way, a text message could effectively "turn off" cells without the need to even come into the lab!
  • We imagine that a voltage activated transcriptional response might be very useful in cardiovascular research. For example, it might be used to model arrhythmias in cardiac tissue, because using our system of voltage (or calcium influx) activated transcription it might be possible to weed out cells displaying action potentials, like live muscle cells that are contracting. We hypothesize this could be done by causing a selectable transcriptional response to the calcium influx of the action potential.
  • We believe that the concept of voltage controlled transcription in yeast might have large industrial applications, specifically in the field of fermentation. By designing yeast that are taken in and out of the growth cycle by simple voltage signals we would be able to dynamically control, for example, yeast population density and hence fermentation rates in bioreactors. In theory, however, this voltage control could be tuned to modulate nearly any cellular behavior in any organism with a nucleus.

Our Accomplishments
We have...

  • Extended previous work on voltage sensitivity (Valencia 2009) in S. cerevisiae, bringing the response from the biochemical domain into the transcriptional.
  • Constructed a library of 7 voltage-activated yeast upstream activation sequences with varying sensitivity.
  • Characterized two full voltage-activated promoters for yeast.
  • Developed a model to describe the transcriptional response to voltage of our system.
  • Successfully leveraged post-translational modification machinery, namely de-phosphorylation of Crz1 by calcineurin, to initiate a transcriptional response.
  • Fabricated a highly accurate microfluidic electro-stimulation setup using gold electrodes on a silicone wafer and are currently in the process of refining the fabrication technique.

Team: We are a team of eleven undergraduate students deeply interested in synthetic biology. We hail from a variety of disciplines including, chemistry, biology and engineering. We’re a fresh new team with varying levels of experience united by our passion for science.

JHU iGEM 2010