Team:HokkaidoU Japan/Notebook/August25
From 2010.igem.org
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(→1-3AのDNA量推定) |
(→Estimation of 1-3A Consentration) |
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=Estimation of 1-3A Consentration= | =Estimation of 1-3A Consentration= | ||
- | [[Image:HokkaidoU Japan 20100825a.jpg|200px|right|thumb|]] | + | [[Image:HokkaidoU Japan 20100825a.jpg|200px|right|thumb|Electrophoresis of 1uL of 1-3A DNA]] |
- | 1-3A | + | *Added 1 uL of 1-3A into 30 uL of competent cells |
- | * 1 | + | *Transformation was successful |
- | + | *Electrophoresed 1 uL of 1-3A,calculated amount of transformed DNA | |
+ | →Estimated concentration 2 ng/uL | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
Revision as of 09:41, 22 September 2010
Transformation Results
Colony Check
Plate | Colonies |
M 34 | no |
M 12 | yes |
I 34 | no |
I 34 | yes |
1-3A 34 | yes |
1-3A 12 | yes |
- 1-3A had colonies in lated on mediums containing 34 ug/uL of chloramphenicol
- So the medium and antibiotic consentration seems ok,
- Medium on which M 12 was plated was inoculated with chloramphenicol after solidification so there were some irregularities and colonies on the fringe
- Colonies of 1-3A and 12 were obviously different
→ So we suspected issues in Ligation and DNA concentration bused for transformation
Estimation of 1-3A Consentration
- Added 1 uL of 1-3A into 30 uL of competent cells
- Transformation was successful
- Electrophoresed 1 uL of 1-3A,calculated amount of transformed DNA
→Estimated concentration 2 ng/uL
pSB1C3をエタ沈で濃縮,Ligation
エタ沈
- 3 M 酢酸ナトリウム 8.2 uL加える
- 100%エタノールを205 uL加え,混ぜる
- 15,00rpm@4℃で10分間遠心する
- 上清を捨て,500 uL 70%エタノールを加え,混ぜる
- 15,00rpm@4℃で5分間遠心する
- 上清を捨て,真空デシケータで乾燥させる
- DW 8.2 uLを加え,元の10倍に濃縮する
Ligation
- 8.2 uL DNA solutionに同量のLigation Solutionを加える
- T4 ligase 1 uLを加え,16℃で30分間インキュベート
- 明日,電気泳動・ゲル抽・Transformation
らおりプライマーで作ったPCR productsのDigestion
前日のPCRから,増やすことのできたパーツのDNA量を求めた
RBS | 27 ng/uL | 312 bp |
GFP | 54 ng/uL | 1020 bp |
dT | 49 ng/uL | 429 bp |
Digestion 反応系
Reagent | Amount |
---|---|
10x M buffer | 1 uL |
DW | 4.5 |
DNA | 2.5 |
BSA | 1 |
EcoR I | 0.5 |
Pst I | 0.5 |
Total | 10 uL |
→37℃で60分
→ラオリプライマーの真価を電気泳動で確認