Team:Heidelberg/Notebook/Modeling

From 2010.igem.org

(Difference between revisions)
Line 1: Line 1:
-
{{:Team:Heidelberg/Double}}
+
{{:Team:Heidelberg/Single}}
-
{{:Team:Heidelberg/Pagetop|note_modeling}}
+
{{:Team:Heidelberg/Single_Pagetop|note_modeling}}
 +
{{:Team:Heidelberg/Side_Top}}
 +
__TOC__
 +
 +
{{:Team:Heidelberg/Side_Bottom}}
=Modeling Notebook=
=Modeling Notebook=
Line 8: Line 12:
Have fun!
Have fun!
-
==Notebook==
+
==April==
-
 
+
-
===<u>April</u>===
+
====29.04.2010====
====29.04.2010====
* Meeting with Nao
* Meeting with Nao
Line 16: Line 18:
** Problems to be avoided
** Problems to be avoided
-
===<u>Juli</u>===
+
==Juli==
====13.06.2010====
====13.06.2010====
* Discussion about first model idea
* Discussion about first model idea
Line 28: Line 30:
** Request for Matlab license
** Request for Matlab license
-
===<u>August</u>===
+
==August==
====05.08.2010====
====05.08.2010====
* Activation of MatLab-Accounts
* Activation of MatLab-Accounts
Line 49: Line 51:
** Advantages and limitations of a fuzzy logic
** Advantages and limitations of a fuzzy logic
-
===<u>September</u>===
+
==September==
====07.09.2010====
====07.09.2010====
* Projectstart miBEAT
* Projectstart miBEAT
Line 75: Line 77:
** Decision on the use of the modified targetscan_50_context_scores–Algorithm for binding site evaluation
** Decision on the use of the modified targetscan_50_context_scores–Algorithm for binding site evaluation
-
{{:Team:Heidelberg/Pagemiddle}}
+
{{:Team:Heidelberg/Single_Bottom}}
-
__TOC__
+
-
{{:Team:Heidelberg/Bottom}}
+

Revision as of 01:07, 27 October 2010

Modeling Notebook

Welcome to the notebook of the modeling project. This notebook comprises the work on four sublanes: miBEAT, miRockdown, miBS designer and the model training set. Have fun!

April

29.04.2010

  • Meeting with Nao
    • Discuss about last years modeling approach
    • Problems to be avoided

Juli

13.06.2010

  • Discussion about first model idea
The first model concept


21.06.2010

  • Discussion about programming languages
    • Advantages of R, Perl and MatLab
    • Decision to use Perl and Matlab
    • Request for Matlab license

August

05.08.2010

  • Activation of MatLab-Accounts

09.08.2010

11.08.2010

  • Activation of MatLab fuzzy logic toolbox

18.08.2010

  • Meeting with Tim and Nao
    • Options to optimize a fuzzy logic model

22.08.2010

  • Telemeeting with Stephen Krämer
    • Advantages and limitations of a fuzzy logic

September

07.09.2010

  • Projectstart miBEAT
    • decision to create an interactive GUI on the wiki
    • creation of test model using javascript
  • Activation of MatLab neuro net toolbox
    • Projectstart Neuronal Network model

08.09.2010

  • Presentation of miBEAT project-concept on official team meeting

16-17.09.2010

  • 6th Workshop on Computation of Biochemical Pathways and Genetic Networks
    • Parameter estimation in fuzzy/noisy systems
    • Global sensitivity analysis
    • New approaches to spatial modeling
    • Computation of microRNA regulatory network
  • Discussion with Professor Sanghamitra Bandyopadhyay from the Machine Intelligence Unit of the Indian Statistical Institute in Kolkata

28.09.2010

  • Project Start miRockdown
    • Developement of miRockdown concept
    • Decision on the use of the modified targetscan_50_context_scores–Algorithm for binding site evaluation

Retrieved from "http://2010.igem.org/Team:Heidelberg/Notebook/Modeling"