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Team:Heidelberg/Notebook/Modeling
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| + | =Modeling Notebook= | ||
| + | |||
| + | Introduction Aastha | ||
| + | |||
| + | ==Notebook== | ||
| + | |||
| + | ===April=== | ||
| + | ====29.04.2010=== | ||
| + | * Meeting with Nao | ||
| + | ** Discuss about last years modeling approach | ||
| + | ** Problems to be avoided | ||
| + | |||
| + | ===Juli=== | ||
| + | ====13.06.2010==== | ||
| + | * Discussion about first model idea | ||
| + | [[Image:First_model_concept_iGEM_Heidelberg.JPG|center|alt=The first model concept]] | ||
| + | |||
| + | |||
| + | ====21.06.2010==== | ||
| + | * Discussion about programming languages | ||
| + | ** Advantages of R, Perl and MatLab | ||
| + | ** Decision to use Perl and Matlab | ||
| + | ** Request for Matlab license | ||
| + | |||
| + | ===August=== | ||
| + | ====05.08.2010==== | ||
| + | * Activation of MatLab-Accounts | ||
| + | |||
| + | ====09.08.2010==== | ||
| + | * Meeting with Dr. König | ||
| + | ** Advantages and disadvantages of different modeling approaches | ||
| + | ** Possibility to use Neuronal Networks and Support Vektor Machines | ||
| + | *** http://en.wikipedia.org/wiki/Support_vector_machine | ||
| + | |||
| + | ====11.08.2010==== | ||
| + | * Activation of MatLab fuzzy logic toolbox | ||
| + | |||
| + | ====18.08.2010==== | ||
| + | * Meeting with Tim and Nao | ||
| + | ** Options to optimize a fuzzy logic model | ||
| + | |||
| + | ====22.08.2010==== | ||
| + | * Telemeeting with Stephen Krämer | ||
| + | ** Advantages and limitations of a fuzzy logic | ||
| + | |||
| + | ===September=== | ||
| + | ====07.09.2010==== | ||
| + | * Projectstart miBEAT | ||
| + | ** decision to create an interactive GUI on the wiki | ||
| + | ** creation of test model using javascript | ||
| + | * Activation of MatLab neuro net toolbox | ||
| + | ** Projectstart Neuronal Network model | ||
| + | |||
| + | ====08.09.2010==== | ||
| + | * Presentation of miBEAT project-concept on official team meeting | ||
| + | |||
| + | ====16-17.09.2010==== | ||
| + | * 6th Workshop on Computation of Biochemical Pathways and Genetic Networks | ||
| + | ** Parameter estimation in fuzzy/noisy systems | ||
| + | ** Global sensitivity analysis | ||
| + | ** New approaches to spatial modeling | ||
| + | ** Computation of microRNA regulatory network | ||
| + | * Discussion with Professor Sanghamitra Bandyopadhyay from the Machine Intelligence Unit of the Indian Statistical Institute in Kolkata | ||
| + | ** Advise to use a Rough set modeling approach | ||
| + | *** http://en.wikipedia.org/wiki/Rough_set | ||
| + | |||
| + | ====28.09.2010==== | ||
| + | * Project Start miRockdown | ||
| + | ** Developement of miRockdown concept | ||
| + | ** Decision on the use of the modified targetscan_50_context_scores–Algorithm for binding site evaluation | ||
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{{:Team:Heidelberg/Pagemiddle}} | {{:Team:Heidelberg/Pagemiddle}} | ||
{{:Team:Heidelberg/Bottom}} | {{:Team:Heidelberg/Bottom}} | ||
Revision as of 18:59, 26 October 2010
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