Team:Heidelberg/Modeling/miBSdesigner

From 2010.igem.org

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<div class="title"><span style="font-size: 17.0px; text-decoration: underline;">Sticky ends for integration in plasmid: </span></div>
<div class="title"><span style="font-size: 17.0px; text-decoration: underline;">Sticky ends for integration in plasmid: </span></div>
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<div class="option">  <SELECT name="stickyends" onchange="chMd3()">
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<div class="option">  <SELECT id="stickyends" name="stickyends" onchange="chMd3()">
<OPTION SELECTED value="none">None
<OPTION SELECTED value="none">None
<OPTION value="BBB">Biobricks Standard RFC-12
<OPTION value="BBB">Biobricks Standard RFC-12
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<script type="text/javascript" src="final_code_miBS_HD2010.txt"> </script>
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<script type="text/javascript" src="http://2010.igem.org/Image:Final_code_miBS_HD2010.txt"> </script>
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{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Pagemiddle}}

Revision as of 15:04, 25 October 2010

BS designer for miRNA
Sequence name

microRNA Sequence ( 5' -> 3')

Spacer (inert sequence)


Perfect Binding Site
Imperfect Binding Site with 4 nt bulge (9-12)
Personalized Binding Site

Seed sequence (1-8)
Customized MISMATCH position

Supplementary region
Customized MATCH positions (input numbers from 9 to 22)


Modify AU content
A in position -1
A in position 0
A in position 1
A in position 8
A in position 9
A in position 10


Sticky ends for integration in plasmid:
Customized: 5' 3'



Construction of microRNA binding sites



Name of primer 1


Sequence of primer 1


Name of primer 2


Sequence of primer 2