Team:Heidelberg/Modeling/descriptions

From 2010.igem.org

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{{:Team:Heidelberg/tables|normal=FFF|highlight=ddd}}
{{:Team:Heidelberg/tables|normal=FFF|highlight=ddd}}
{{:Team:Heidelberg/Pagetop|trainingset}}
{{:Team:Heidelberg/Pagetop|trainingset}}
 +
==Modeling trainingset==
==Modeling trainingset==
-
{| border="1" class="wikitable zebra sortable" cellpadding="6" style="width: 900px; border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;"
+
{| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;"
-
!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS !! perfect !! bulged !! bulge size !! seed type !! 3' score !! AU score !! knockdown [%] !! experimental conditions
+
!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS !! perfect? !! bulged? !! bulge size !! seed type !! 3'-score !! AU-score !! knockdown% !! experimental conditions
|-
|-
-
|align="right"| miR122_102 || TGGAGTGTGACA- ATGGTGTTTGT || GACAAACACCATTGTCACACTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  ||  ||
+
|align="right"| miR122_102 || TGGAGTGTGACAATGGTGTT- TGT || GACAAACACCATTGTCACAC- TCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  ||  ||
|-
|-
-
|align="right"| miR122_106 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 ||  0,624 ||  ||
+
|align="right"| miR122_106 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGAAGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 ||  0.624 ||  ||
|-
|-
-
|align="right"| miR122_134 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATACGGACACTCCAGA- GACACAAACACCATGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7,5 || 0,576  ||  ||
+
|align="right"| miR122_134 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATACGGACACT- CCAGAGACACAAACACCA- TGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576  ||  ||
|-
|-
-
|align="right"| miR122_136 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATACGGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,595 ||  ||
+
|align="right"| miR122_136 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATACGGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 ||  ||
|-
|-
-
|align="right"| miR122_197 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGTCGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,597 ||  ||
+
|align="right"| miR122_197 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGTCGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 ||  ||
|-
|-
-
|align="right"| miR122_199 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGCCAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
+
|align="right"| miR122_199 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGCCAACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 ||  ||
|-
|-
-
|align="right"| miR122_201 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATACGAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,624 ||  ||
+
|align="right"| miR122_201 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATACGAACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 ||  ||
|-
|-
-
|align="right"| miR122_203 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGCAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,6 ||  ||
+
|align="right"| miR122_203 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGCAGACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 ||  ||
|-
|-
-
|align="right"| miR122_277 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGCCTACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
+
|align="right"| miR122_277 || TGGAGTGTGACAATGGTGTT- TGT || ACAAACACCATGCCTACACT- CCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 ||  ||
|-
|-
-
|align="right"| miR122_138 || TGGAGTGTGACA- ATGGTGTTTGT || GGCCAGCACCATTTCACACACAC- TCCTTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 5 || 0,336 ||  ||
+
|align="right"| miR122_138 || TGGAGTGTGACAATGGTGTT- TGT || GGCCAGCACCATTTCACACA- CACTCCTTCTAGAGGCCGCT- GGC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 ||  ||
|-
|-
-
|align="right"| miR122_140 || TGGAGTGTGACA- ATGGTGTTTGT || GCCCCTGATGGGGGCGACACTCC- ATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1,5 || 0,327 ||  ||
+
|align="right"| miR122_140 || TGGAGTGTGACAATGGTGTT- TGT || GCCCCTGATGGGGGCGACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 ||  ||
|-
|-
-
|align="right"| miR122_142 || TGGAGTGTGACA- ATGGTGTTTGT || GACTAAGGCTGCTCCATCAACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 4 || 0,314 ||  ||
+
|align="right"| miR122_142 || TGGAGTGTGACAATGGTGTT- TGT || GACTAAGGCTGCTCCATCAA- CACTCCATCTAGAGGCCGCT- GGC || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 ||  ||
|-
|-
-
|align="right"| miR122_144 || TGGAGTGTGACA- ATGGTGTTTGT || GCAATGGAGAGTCACCTAGACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2,5 || 0,314 ||  ||
+
|align="right"| miR122_144 || TGGAGTGTGACAATGGTGTT- TGT || GCAATGGAGAGTCACCTAGA- CACTCCATCTAGAGGCCGCT- GGC || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 ||  ||
|-
|-
-
|align="right"| miR122_146 || TGGAGTGTGACA- ATGGTGTTTGT || GACTTGAGCAGAACAAACACTCC- ATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0,327 ||  ||
+
|align="right"| miR122_146 || TGGAGTGTGACAATGGTGTT- TGT || GACTTGAGCAGAACAAACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 ||  ||
|-
|-
-
|align="right"| miR122_148 || TGGAGTGTGACA- ATGGTGTTTGT || GCAAATCATGATCAAAAACACTC- CCTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 2,5 || 0,221 ||  ||
+
|align="right"| miR122_148 || TGGAGTGTGACAATGGTGTT- TGT || GCAAATCATGATCAAAAACA- CTCCCTCTAGAGGCCGCTGG- C || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGC- ACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0,492 ||  ||
+
|align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0.492 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGC- ACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGC- ACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,495 ||  ||
+
|align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.495 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,496 ||  ||
+
|align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.496 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,466 ||  ||
+
|align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.466 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGC- ACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0.442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGC- ACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| sag_25_1 || GAACAAATGGC- ACTAGTAAACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
+
|align="right"| sag_25_1 || GAACAAATGGCACTAGTAAA- CTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 ||  ||
|-
|-
-
|align="right"| sag_25_2 || GAACAAATGGC- ACTAGTAAACTGAG || ATAATTTGTTCATTTGTTCATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
+
|align="right"| sag_25_2 || GAACAAATGGCACTAGTAAA- CTGAG || ATAATTTGTTCATTTGTTCA- TTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 ||  ||
|-  ||
|-  ||
-
|align="right"| sag_25_3 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTGCCATTTG- TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| sag_25_3 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTGCCATTTGT- TCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| sag_25_4 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTGCAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8,5 || 0,587 ||  ||
+
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTGCAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_5 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTGAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0,587 ||  ||
+
|align="right"| sag_25_5 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTGAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_6 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7,5 || 0,587 ||  ||
+
|align="right"| sag_25_6 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGTAAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_7 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0,587 ||  ||
+
|align="right"| sag_25_7 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGAAAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 ||  ||
|-
|-
-
|align="right"| sag_25_8 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAATTATAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,603 ||  ||
+
|align="right"| sag_25_8 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAATTATAAATTTGT- TAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 ||  ||
|-
|-
-
|align="right"| sag_25_9 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAGCCGCAAATTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,305 ||  ||
+
|align="right"| sag_25_9 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAGCCGCAAATTTGT- TAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 ||  ||
|-
|-
-
|align="right"| sag_25_10 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2,5 || 0,69 ||  ||
+
|align="right"| sag_25_10 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 ||  ||
|-
|-
-
|align="right"| sag_25_11 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
+
|align="right"| sag_25_11 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_12 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0,526 ||  ||
+
|align="right"| sag_25_12 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 ||  ||
|-
|-
-
|align="right"| sag_25_13 || GAACAAATGGC- ACTAGTAAACTGAG || TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0,305 ||  ||
+
|align="right"| sag_25_13 || GAACAAATGGCACTAGTAAA- CTGAG || TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 ||  ||
|-
|-
-
|align="right"| sag_25_14 || GAACAAATGGC- ACTAGTAAACTGAG || CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0,603 ||  ||
+
|align="right"| sag_25_14 || GAACAAATGGCACTAGTAAA- CTGAG || CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 ||  ||
|-
|-
-
|align="right"| sag_25_15 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0,497 ||  ||
+
|align="right"| sag_25_15 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 ||  ||
|-
|-
-
|align="right"| sag_25_16 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,366 ||  ||
+
|align="right"| sag_25_16 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 ||  ||
|-
|-
-
|align="right"| sag_25_17 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
+
|align="right"| sag_25_17 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_18 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,226 ||  ||
+
|align="right"| sag_25_18 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_20 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,69 ||  ||
+
|align="right"| sag_25_20 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 ||  ||
|-
|-
-
|align="right"| sag_25_21 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0,526 ||  ||
+
|align="right"| sag_25_21 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 ||  ||
|-
|-
-
|align="right"| sag_25_23 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0,69 ||  ||
+
|align="right"| sag_25_23 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 ||  ||
|-
|-
-
|align="right"| sag_25_24 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,497 ||  ||
+
|align="right"| sag_25_24 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 ||  ||
|-
|-
-
|align="right"| sag_25_25 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,366 ||  ||
+
|align="right"| sag_25_25 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 ||  ||
|-
|-
-
|align="right"| sag_25_26 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,348 ||  ||
+
|align="right"| sag_25_26 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 ||  ||
|-
|-
-
|align="right"| sag_25_27 || GAACAAATGGC- ACTAGTAAACTGAG || CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,51 ||  ||
+
|align="right"| sag_25_27 || GAACAAATGGCACTAGTAAA- CTGAG || CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 ||  ||
|-
|-
-
|align="right"| sag_25_28 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0,226 ||  ||
+
|align="right"| sag_25_28 || GAACAAATGGCACTAGTAAA- CTGAG || CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 ||  ||
|-
|-
-
|align="right"| sag_25_29 || GAACAAATGGC- ACTAGTAAACTGAG || GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0,603 ||  ||
+
|align="right"| sag_25_29 || GAACAAATGGCACTAGTAAA- CTGAG || GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 ||  ||
|-
|-
-
|align="right"| sag_25_30 || GAACAAATGGC -ACTAGTAAACTGAG || AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0,603 ||  ||
+
|align="right"| sag_25_30 || GAACAAATGGCACTAGTAAA- CTGAG || AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 ||  ||
|-
|-
-
|align="right"| haat_bs_p_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,799 ||  ||
+
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 ||  ||
|-
|-
-
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,749 ||  ||
+
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.749 ||  ||
|-
|-
-
|align="right"| haat_bs_m10at_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,799 ||  ||
+
|align="right"| haat_bs_m10at_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.799 ||  ||
|-
|-
-
|align="right"| haat_bs_m10ac_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,773 ||  ||
+
|align="right"| haat_bs_m10ac_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.773 ||  ||
|-
|-
-
|align="right"| haat_bs_m11ta_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_m11ta_fw || AAACATGCCTAAACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 ||  ||
|-
|-
-
|align="right"| haat_bs_m11tg_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_m11tg_fw || AAACATGCCTAAACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1.5 || 0.38 ||  ||
|-
|-
-
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 ||  ||
|-
|-
-
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1.5 || 0.38 ||  ||
|-
|-
-
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTA- AACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0,38 || 1 || 0 || 2 || 2 || 0,799 ||  ||
+
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0.38 || 1 || 0 || 2 || 2 || 0.799 ||  ||
|}
|}
{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Bottom}}
{{:Team:Heidelberg/Bottom}}

Revision as of 14:45, 26 October 2010

Modeling trainingset

mi/shRNA-name sequence BSsequence number of BS perfect? bulged? bulge size seed type 3'-score AU-score knockdown% experimental conditions
miR122_102 TGGAGTGTGACAATGGTGTT- TGT GACAAACACCATTGTCACAC- TCCA 1 1 0 0 0 0 0
miR122_106 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATGAAGACACT- CCA 1 0 1 4 3 7.5 0.624
miR122_134 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATACGGACACT- CCAGAGACACAAACACCA- TGAAGACACTCCA 2 0 1 4 3 7.5 0.576
miR122_136 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATACGGACACT- CCA 1 0 1 4 3 7.5 0.595
miR122_197 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATGTCGACACT- CCA 1 0 1 4 3 7.5 0.597
miR122_199 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATGCCAACACT- CCA 1 0 1 4 3 7.5 0.603
miR122_201 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATACGAACACT- CCA 1 0 1 4 3 7.5 0.624
miR122_203 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATGCAGACACT- CCA 1 0 1 4 3 7.5 0.6
miR122_277 TGGAGTGTGACAATGGTGTT- TGT ACAAACACCATGCCTACACT- CCA 1 0 1 4 3 7.5 0.603
miR122_138 TGGAGTGTGACAATGGTGTT- TGT GGCCAGCACCATTTCACACA- CACTCCTTCTAGAGGCCGCT- GGC 1 0 0 0 2 5 0.336
miR122_140 TGGAGTGTGACAATGGTGTT- TGT GCCCCTGATGGGGGCGACAC- TCCATCTAGAGGCCGCTGGC 1 0 0 0 3 1.5 0.327
miR122_142 TGGAGTGTGACAATGGTGTT- TGT GACTAAGGCTGCTCCATCAA- CACTCCATCTAGAGGCCGCT- GGC 1 0 0 0 3 4 0.314
miR122_144 TGGAGTGTGACAATGGTGTT- TGT GCAATGGAGAGTCACCTAGA- CACTCCATCTAGAGGCCGCT- GGC 1 0 0 0 3 2.5 0.314
miR122_146 TGGAGTGTGACAATGGTGTT- TGT GACTTGAGCAGAACAAACAC- TCCATCTAGAGGCCGCTGGC 1 0 0 0 3 2 0.327
miR122_148 TGGAGTGTGACAATGGTGTT- TGT GCAAATCATGATCAAAAACA- CTCCCTCTAGAGGCCGCTGG- C 1 0 0 0 2 2.5 0.221
sAg_19_bs_r10_12_acg_fw GAACAAATGGCACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5.5 0.442
sAg_19_bs_r10_12_taa_fw GAACAAATGGCACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0.492
sAg_19_bs_r9_12_acgg_fw GAACAAATGGCACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5.5 0.442
sAg_19_bs_r9_12_atgt_fw GAACAAATGGCACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5.5 0.495
sAg_19_bs_m10cg_fw GAACAAATGGCACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6.5 0.442
sAg_19_bs_m10ca_fw GAACAAATGGCACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6.5 0.496
sAg_19_bs_m11gc_fw GAACAAATGGCACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0.442
sAg_19_bs_m11ga_fw GAACAAATGGCACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0.466
sAg_19_bs_onlyseed_fw_E GAACAAATGGCACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0.442
sAg_19_bs_p_fw_E GAACAAATGGCACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0
sag_25_1 GAACAAATGGCACTAGTAAA- CTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1.5 0.491
sag_25_2 GAACAAATGGCACTAGTAAA- CTGAG ATAATTTGTTCATTTGTTCA- TTTGTTC 3 0 0 0 2 1.5 0.491
sag_25_3 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGTGCCATTTGT- TCAAAUAUAGCC 1 1 0 0 0 0 0
sag_25_4 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGTGCAATTTGT- TAAAAUUUAGCC 1 0 1 1 3 8.5 0.587
sag_25_5 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGTGAAATTTGT- TAAAAUUUAGCC 1 0 1 2 3 8 0.587
sag_25_6 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGTAAAATTTGT- TAAAAUUUAGCC 1 0 1 3 3 7.5 0.587
sag_25_7 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGAAAAATTTGT- TAAAAUUUAGCC 1 0 1 4 3 7 0.587
sag_25_8 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCAATTATAAATTTGT- TAAAAUUUAGCC 1 0 0 0 3 2 0.603
sag_25_9 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCAGCCGCAAATTTGT- TAAAGGCCCGCC 1 0 0 0 3 2 0.305
sag_25_10 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 2.5 0.69
sag_25_11 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 4 0.226
sag_25_12 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC 1 0 0 0 2 2 0.526
sag_25_13 GAACAAATGGCACTAGTAAA- CTGAG TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC 1 0 0 0 3 7 0.305
sag_25_14 GAACAAATGGCACTAGTAAA- CTGAG CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 4 0.603
sag_25_15 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC 1 0 0 0 1 4 0.497
sag_25_16 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC 1 0 0 0 1 5 0.366
sag_25_17 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 4 0.226
sag_25_18 GAACAAATGGCACTAGTAAA- CTGAG CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 6 0.226
sag_25_20 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 7 0.69
sag_25_21 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC 1 0 0 0 2 7 0.526
sag_25_23 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 3 0.69
sag_25_24 GAACAAATGGCACTAGTAAA- CTGAG CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC 1 0 0 0 1 5 0.497
sag_25_25 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC 1 0 0 0 1 7 0.366
sag_25_26 GAACAAATGGCACTAGTAAA- CTGAG CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC 1 0 0 0 2 4 0.348
sag_25_27 GAACAAATGGCACTAGTAAA- CTGAG CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC 1 0 0 0 2 6 0.51
sag_25_28 GAACAAATGGCACTAGTAAA- CTGAG CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 5 0.226
sag_25_29 GAACAAATGGCACTAGTAAA- CTGAG GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 6 0.603
sag_25_30 GAACAAATGGCACTAGTAAA- CTGAG AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 5 0.603
haat_bs_p_fw AAACATGCCTAAACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0.38 1 0 2 2 0.799

Retrieved from "http://2010.igem.org/Team:Heidelberg/Modeling/descriptions"