Team:Heidelberg/Modeling/descriptions

From 2010.igem.org

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(→Modeling trainingset)
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==Modeling trainingset==
==Modeling trainingset==
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{| border="1" class="wikitable zebra sortable" cellpadding="6" style="border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;"
+
{| border="1" class="wikitable zebra sortable" cellpadding="6" style="width: 900px; border:solid 1px #AAAAAA; border-collapse:collapse; background-color:#F9F9F9; font-size:95%; empty-cells:show;"
-
!align="right"| mi/shRNA-name !! sequence !!width="100px"| BSsequence !! number of BS<br> !! perfect BS<br> !! bulged BS<br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%]<br> !! experimental conditions<br>
+
!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS !! perfect? !! bulged? !! bulge-size !! seed-type !! 3'-score !! AU-score !! knockdown% !! experimental conditions
|-
|-
-
|align="right"| miR122_102 || TGGAGTGTGACAATGGTGTTTGT || GACAAACACCATTGTCACACTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  ||  ||
+
|align="right"| miR122_102 || TGGAGTGTGACA- ATGGTGTTTGT || GACAAACACCATTGTCACACTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  ||  ||
|-
|-
-
|align="right"| miR122_106 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 ||  0,624 ||  ||
+
|align="right"| miR122_106 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 ||  0,624 ||  ||
|-
|-
-
|align="right"| miR122_134 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGGACACTCCAGAGACACAAACACCATGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7,5 || 0,576  ||  ||
+
|align="right"| miR122_134 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATACGGACACTCCAGA- GACACAAACACCATGAAGACACTCCA || 2 || 0 || 1 || 4 || 3 || 7,5 || 0,576  ||  ||
|-
|-
-
|align="right"| miR122_136 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,595 ||  ||
+
|align="right"| miR122_136 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATACGGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,595 ||  ||
|-
|-
-
|align="right"| miR122_197 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGTCGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,597 ||  ||
+
|align="right"| miR122_197 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGTCGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,597 ||  ||
|-
|-
-
|align="right"| miR122_199 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCCAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
+
|align="right"| miR122_199 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGCCAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
|-
|-
-
|align="right"| miR122_201 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATACGAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,624 ||  ||
+
|align="right"| miR122_201 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATACGAACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,624 ||  ||
|-
|-
-
|align="right"| miR122_203 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,6 ||  ||
+
|align="right"| miR122_203 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGCAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,6 ||  ||
|-
|-
-
|align="right"| miR122_277 || TGGAGTGTGACAATGGTGTTTGT || ACAAACACCATGCCTACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
+
|align="right"| miR122_277 || TGGAGTGTGACA- ATGGTGTTTGT || ACAAACACCATGCCTACACTCCA || 1 || 0 || 1 || 4 || 3 || 7,5 || 0,603 ||  ||
|-
|-
-
|align="right"| miR122_138 || TGGAGTGTGACAATGGTGTTTGT || GGCCAGCACCATTTCACACACACTCCTTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 5 || 0,336 ||  ||
+
|align="right"| miR122_138 || TGGAGTGTGACA- ATGGTGTTTGT || GGCCAGCACCATTTCACACACAC- TCCTTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 5 || 0,336 ||  ||
|-
|-
-
|align="right"| miR122_140 || TGGAGTGTGACAATGGTGTTTGT || GCCCCTGATGGGGGCGACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1,5 || 0,327 ||  ||
+
|align="right"| miR122_140 || TGGAGTGTGACA- ATGGTGTTTGT || GCCCCTGATGGGGGCGACACTCC- ATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 1,5 || 0,327 ||  ||
|-
|-
-
|align="right"| miR122_142 || TGGAGTGTGACAATGGTGTTTGT || GACTAAGGCTGCTCCATCAACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 4 || 0,314 ||  ||
+
|align="right"| miR122_142 || TGGAGTGTGACA- ATGGTGTTTGT || GACTAAGGCTGCTCCATCAACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 4 || 0,314 ||  ||
|-
|-
-
|align="right"| miR122_144 || TGGAGTGTGACAATGGTGTTTGT || GCAATGGAGAGTCACCTAGACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2,5 || 0,314 ||  ||
+
|align="right"| miR122_144 || TGGAGTGTGACA- ATGGTGTTTGT || GCAATGGAGAGTCACCTAGACAC- TCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2,5 || 0,314 ||  ||
|-
|-
-
|align="right"| miR122_146 || TGGAGTGTGACAATGGTGTTTGT || GACTTGAGCAGAACAAACACTCCATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0,327 ||  ||
+
|align="right"| miR122_146 || TGGAGTGTGACA- ATGGTGTTTGT || GACTTGAGCAGAACAAACACTCC- ATCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 3 || 2 || 0,327 ||  ||
|-
|-
-
|align="right"| miR122_148 || TGGAGTGTGACAATGGTGTTTGT || GCAAATCATGATCAAAAACACTCCCTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 2,5 || 0,221 ||  ||
+
|align="right"| miR122_148 || TGGAGTGTGACA- ATGGTGTTTGT || GCAAATCATGATCAAAAACACTC- CCTCTAGAGGCCGCTGGC || 1 || 0 || 0 || 0 || 2 || 2,5 || 0,221 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGC- ACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0,492 ||  ||
+
|align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0,492 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGC- ACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,495 ||  ||
+
|align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGC- ACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5,5 || 0,495 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,496 ||  ||
+
|align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,496 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,466 ||  ||
+
|align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGC- ACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0,466 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0,442 ||  ||
+
|align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGC- ACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0,442 ||  ||
|-
|-
-
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGC- ACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| sag_25_1 || GAACAAATGGCACTAGTAAACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
+
|align="right"| sag_25_1 || GAACAAATGGC- ACTAGTAAACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
|-
|-
-
|align="right"| sag_25_2 || GAACAAATGGCACTAGTAAACTGAG || ATAATTTGTTCATTTGTTCATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
+
|align="right"| sag_25_2 || GAACAAATGGC- ACTAGTAAACTGAG || ATAATTTGTTCATTTGTTCATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1,5 || 0,491 ||  ||
|-  ||
|-  ||
-
|align="right"| sag_25_3 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGCCATTTGTTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| sag_25_3 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTGCCATTTG- TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGCAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8,5 || 0,587 ||  ||
+
|align="right"| sag_25_4 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTGCAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8,5 || 0,587 ||  ||
|-
|-
-
|align="right"| sag_25_5 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTGAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0,587 ||  ||
+
|align="right"| sag_25_5 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTGAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0,587 ||  ||
|-
|-
-
|align="right"| sag_25_6 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGTAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7,5 || 0,587 ||  ||
+
|align="right"| sag_25_6 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGTAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7,5 || 0,587 ||  ||
|-
|-
-
|align="right"| sag_25_7 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0,587 ||  ||
+
|align="right"| sag_25_7 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0,587 ||  ||
|-
|-
-
|align="right"| sag_25_8 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAATTATAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,603 ||  ||
+
|align="right"| sag_25_8 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAATTATAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,603 ||  ||
|-
|-
-
|align="right"| sag_25_9 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAGCCGCAAATTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,305 ||  ||
+
|align="right"| sag_25_9 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAGCCGCAAATTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0,305 ||  ||
|-
|-
-
|align="right"| sag_25_10 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAGCTATAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2,5 || 0,69 ||  ||
+
|align="right"| sag_25_10 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2,5 || 0,69 ||  ||
|-
|-
-
|align="right"| sag_25_11 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACGCCGTAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
+
|align="right"| sag_25_11 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
|-
|-
-
|align="right"| sag_25_12 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCAATTATAAATTTGTTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0,526 ||  ||
+
|align="right"| sag_25_12 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0,526 ||  ||
|-
|-
-
|align="right"| sag_25_13 || GAACAAATGGCACTAGTAAACTGAG || TCCTTACTAGTGCAATTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0,305 ||  ||
+
|align="right"| sag_25_13 || GAACAAATGGC- ACTAGTAAACTGAG || TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0,305 ||  ||
|-
|-
-
|align="right"| sag_25_14 || GAACAAATGGCACTAGTAAACTGAG || CTGAATATAGTGAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0,603 ||  ||
+
|align="right"| sag_25_14 || GAACAAATGGC- ACTAGTAAACTGAG || CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0,603 ||  ||
|-
|-
-
|align="right"| sag_25_15 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTACCTAATTTTGTTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0,497 ||  ||
+
|align="right"| sag_25_15 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0,497 ||  ||
|-
|-
-
|align="right"| sag_25_16 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCCTAGTGGATTTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,366 ||  ||
+
|align="right"| sag_25_16 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,366 ||  ||
|-
|-
-
|align="right"| sag_25_17 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACATTGCAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
+
|align="right"| sag_25_17 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,226 ||  ||
|-
|-
-
|align="right"| sag_25_18 || GAACAAATGGCACTAGTAAACTGAG || CTGGGACTAGTGCAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,226 ||  ||
+
|align="right"| sag_25_18 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,226 ||  ||
|-
|-
-
|align="right"| sag_25_20 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,69 ||  ||
+
|align="right"| sag_25_20 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,69 ||  ||
|-
|-
-
|align="right"| sag_25_21 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGAAAAATTTGTTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0,526 ||  ||
+
|align="right"| sag_25_21 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0,526 ||  ||
|-
|-
-
|align="right"| sag_25_23 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCATAGATAATTTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0,69 ||  ||
+
|align="right"| sag_25_23 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0,69 ||  ||
|-
|-
-
|align="right"| sag_25_24 || GAACAAATGGCACTAGTAAACTGAG || CTGGTACTAGCTAATTTTGTTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,497 ||  ||
+
|align="right"| sag_25_24 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0,497 ||  ||
|-
|-
-
|align="right"| sag_25_25 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTAGCCGATTTTGTTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,366 ||  ||
+
|align="right"| sag_25_25 || GAACAAATGGC- ACTAGTAAACTGAG || AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0,366 ||  ||
|-
|-
-
|align="right"| sag_25_26 || GAACAAATGGCACTAGTAAACTGAG || CTGGGCCTAGAAAAATTTGTTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,348 ||  ||
+
|align="right"| sag_25_26 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0,348 ||  ||
|-
|-
-
|align="right"| sag_25_27 || GAACAAATGGCACTAGTAAACTGAG || CTTTTACTAGAAAAATTTGTTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,51 ||  ||
+
|align="right"| sag_25_27 || GAACAAATGGC- ACTAGTAAACTGAG || CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0,51 ||  ||
|-
|-
-
|align="right"| sag_25_28 || GAACAAATGGCACTAGTAAACTGAG || CTGGTACTAGGCAAATTTGTTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0,226 ||  ||
+
|align="right"| sag_25_28 || GAACAAATGGC- ACTAGTAAACTGAG || CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0,226 ||  ||
|-
|-
-
|align="right"| sag_25_29 || GAACAAATGGCACTAGTAAACTGAG || GCTTTACTAGAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0,603 ||  ||
+
|align="right"| sag_25_29 || GAACAAATGGC- ACTAGTAAACTGAG || GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0,603 ||  ||
|-
|-
-
|align="right"| sag_25_30 || GAACAAATGGCACTAGTAAACTGAG || AGTTTACTTTAAAAATTTGTTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0,603 ||  ||
+
|align="right"| sag_25_30 || GAACAAATGGC -ACTAGTAAACTGAG || AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0,603 ||  ||
|-
|-
-
|align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
+
|align="right"| haat_bs_p_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 ||  ||
|-
|-
-
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,799 ||  ||
+
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,799 ||  ||
|-
|-
-
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,749 ||  ||
+
|align="right"| haat_bs_r10_12_agc_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAGCGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5,5 || 0,749 ||  ||
|-
|-
-
|align="right"| haat_bs_m10at_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,799 ||  ||
+
|align="right"| haat_bs_m10at_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTTTGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,799 ||  ||
|-
|-
-
|align="right"| haat_bs_m10ac_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,773 ||  ||
+
|align="right"| haat_bs_m10ac_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTTCGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 6,5 || 0,773 ||  ||
|-
|-
-
|align="right"| haat_bs_m11ta_fw || AAACATGCCTAAACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_m11ta_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTAAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
|-
|-
-
|align="right"| haat_bs_m11tg_fw || AAACATGCCTAAACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_m11tg_fw || AAACATGCCTA- AACGCTTC || GAAGCGTTGAGGCATGTTT || 1 || 0 || 1 || 1 || 2 || 1,5 || 0,38 ||  ||
|-
|-
-
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_r9_12_aatc_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAATCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
|-
|-
-
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTAAACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
+
|align="right"| haat_bs_r9_12_agcc_fw || AAACATGCCTA- AACGCTTC || GAAGCGTAGCCGCATGTTT || 1 || 0 || 1 || 4 || 2 || 1,5 || 0,38 ||  ||
|-
|-
-
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0,38 || 1 || 0 || 2 || 2 || 0,799 ||  ||
+
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTA- AACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0,38 || 1 || 0 || 2 || 2 || 0,799 ||  ||
|}
|}
{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Pagemiddle}}
{{:Team:Heidelberg/Bottom}}
{{:Team:Heidelberg/Bottom}}

Revision as of 14:35, 26 October 2010

Modeling trainingset

mi/shRNA-name sequence BSsequence number of BS perfect? bulged? bulge-size seed-type 3'-score AU-score knockdown% experimental conditions
miR122_102 TGGAGTGTGACA- ATGGTGTTTGT GACAAACACCATTGTCACACTCCA 1 1 0 0 0 0 0
miR122_106 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGAAGACACTCCA 1 0 1 4 3 7,5 0,624
miR122_134 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATACGGACACTCCAGA- GACACAAACACCATGAAGACACTCCA 2 0 1 4 3 7,5 0,576
miR122_136 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATACGGACACTCCA 1 0 1 4 3 7,5 0,595
miR122_197 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGTCGACACTCCA 1 0 1 4 3 7,5 0,597
miR122_199 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGCCAACACTCCA 1 0 1 4 3 7,5 0,603
miR122_201 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATACGAACACTCCA 1 0 1 4 3 7,5 0,624
miR122_203 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGCAGACACTCCA 1 0 1 4 3 7,5 0,6
miR122_277 TGGAGTGTGACA- ATGGTGTTTGT ACAAACACCATGCCTACACTCCA 1 0 1 4 3 7,5 0,603
miR122_138 TGGAGTGTGACA- ATGGTGTTTGT GGCCAGCACCATTTCACACACAC- TCCTTCTAGAGGCCGCTGGC 1 0 0 0 2 5 0,336
miR122_140 TGGAGTGTGACA- ATGGTGTTTGT GCCCCTGATGGGGGCGACACTCC- ATCTAGAGGCCGCTGGC 1 0 0 0 3 1,5 0,327
miR122_142 TGGAGTGTGACA- ATGGTGTTTGT GACTAAGGCTGCTCCATCAACAC- TCCATCTAGAGGCCGCTGGC 1 0 0 0 3 4 0,314
miR122_144 TGGAGTGTGACA- ATGGTGTTTGT GCAATGGAGAGTCACCTAGACAC- TCCATCTAGAGGCCGCTGGC 1 0 0 0 3 2,5 0,314
miR122_146 TGGAGTGTGACA- ATGGTGTTTGT GACTTGAGCAGAACAAACACTCC- ATCTAGAGGCCGCTGGC 1 0 0 0 3 2 0,327
miR122_148 TGGAGTGTGACA- ATGGTGTTTGT GCAAATCATGATCAAAAACACTC- CCTCTAGAGGCCGCTGGC 1 0 0 0 2 2,5 0,221
sAg_19_bs_r10_12_acg_fw GAACAAATGGC- ACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5,5 0,442
sAg_19_bs_r10_12_taa_fw GAACAAATGGC- ACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0,492
sAg_19_bs_r9_12_acgg_fw GAACAAATGGC- ACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5,5 0,442
sAg_19_bs_r9_12_atgt_fw GAACAAATGGC- ACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5,5 0,495
sAg_19_bs_m10cg_fw GAACAAATGGC- ACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6,5 0,442
sAg_19_bs_m10ca_fw GAACAAATGGC- ACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6,5 0,496
sAg_19_bs_m11gc_fw GAACAAATGGC- ACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0,442
sAg_19_bs_m11ga_fw GAACAAATGGC- ACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0,466
sAg_19_bs_onlyseed_fw_E GAACAAATGGC- ACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0,442
sAg_19_bs_p_fw_E GAACAAATGGC- ACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0
sag_25_1 GAACAAATGGC- ACTAGTAAACTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1,5 0,491
sag_25_2 GAACAAATGGC- ACTAGTAAACTGAG ATAATTTGTTCATTTGTTCATTTGTTC 3 0 0 0 2 1,5 0,491
sag_25_3 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTGCCATTTG- TTCAAAUAUAGCC 1 1 0 0 0 0 0
sag_25_4 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTGCAATTTG- TTAAAAUUUAGCC 1 0 1 1 3 8,5 0,587
sag_25_5 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTGAAATTTG- TTAAAAUUUAGCC 1 0 1 2 3 8 0,587
sag_25_6 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGTAAAATTTG- TTAAAAUUUAGCC 1 0 1 3 3 7,5 0,587
sag_25_7 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGAAAAATTTG- TTAAAAUUUAGCC 1 0 1 4 3 7 0,587
sag_25_8 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAATTATAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 2 0,603
sag_25_9 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAGCCGCAAATTTG- TTAAAGGCCCGCC 1 0 0 0 3 2 0,305
sag_25_10 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAGCTATAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 2,5 0,69
sag_25_11 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACGCCGTAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 4 0,226
sag_25_12 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCAATTATAAATTTG- TTGAAAUUUAGCC 1 0 0 0 2 2 0,526
sag_25_13 GAACAAATGGC- ACTAGTAAACTGAG TCCTTACTAGTGCAATTTG- TTAAAGGCCCGCC 1 0 0 0 3 7 0,305
sag_25_14 GAACAAATGGC- ACTAGTAAACTGAG CTGAATATAGTGAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 4 0,603
sag_25_15 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTACCTAATTTTG- TTAAAAUCCGGCC 1 0 0 0 1 4 0,497
sag_25_16 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCCTAGTGGATTTTG- TTAAAGGCCCGCC 1 0 0 0 1 5 0,366
sag_25_17 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACATTGCAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 4 0,226
sag_25_18 GAACAAATGGC- ACTAGTAAACTGAG CTGGGACTAGTGCAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 6 0,226
sag_25_20 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGAAAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 7 0,69
sag_25_21 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGAAAAATTTG- TTGAAAUUUAGCC 1 0 0 0 2 7 0,526
sag_25_23 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCATAGATAATTTTG- TTAAAAUUUAGCC 1 0 0 0 1 3 0,69
sag_25_24 GAACAAATGGC- ACTAGTAAACTGAG CTGGTACTAGCTAATTTTG- TTAAAAUCCGGCC 1 0 0 0 1 5 0,497
sag_25_25 GAACAAATGGC- ACTAGTAAACTGAG AGTTTACTAGCCGATTTTG- TTAAAGGCCCGCC 1 0 0 0 1 7 0,366
sag_25_26 GAACAAATGGC- ACTAGTAAACTGAG CTGGGCCTAGAAAAATTTG- TTGAAAUCCGGCC 1 0 0 0 2 4 0,348
sag_25_27 GAACAAATGGC- ACTAGTAAACTGAG CTTTTACTAGAAAAATTTG- TTGAAUUUAGCC 1 0 0 0 2 6 0,51
sag_25_28 GAACAAATGGC- ACTAGTAAACTGAG CTGGTACTAGGCAAATTTG- TTGAAGGCCCGCC 1 0 0 0 2 5 0,226
sag_25_29 GAACAAATGGC- ACTAGTAAACTGAG GCTTTACTAGAAAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 6 0,603
sag_25_30 GAACAAATGGC -ACTAGTAAACTGAG AGTTTACTTTAAAAATTTG- TTAAAAUUUAGCC 1 0 0 0 3 5 0,603
haat_bs_p_fw AAACATGCCTA- AACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0
haat_bs_r10_12_aat_fw AAACATGCCTA- AACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5,5 0,799
haat_bs_r10_12_agc_fw AAACATGCCTA- AACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5,5 0,749
haat_bs_m10at_fw AAACATGCCTA- AACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6,5 0,799
haat_bs_m10ac_fw AAACATGCCTA- AACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6,5 0,773
haat_bs_m11ta_fw AAACATGCCTA- AACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1,5 0,38
haat_bs_m11tg_fw AAACATGCCTA- AACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1,5 0,38
haat_bs_r9_12_aatc_fw AAACATGCCTA- AACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1,5 0,38
haat_bs_r9_12_agcc_fw AAACATGCCTA- AACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1,5 0,38
haat_bs_onlyseed_fw AAACATGCCTA- AACGCTTC CTTCGCAAATCGCATGTTT 1 0,38 1 0 2 2 0,799

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