Team:Heidelberg/Modeling/Data Overview

From 2010.igem.org

(Difference between revisions)
 
(3 intermediate revisions not shown)
Line 9: Line 9:
!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS<br> !! perfect<br><br> !! bulged<br><br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%] P<br> !! experi- mental conditions<br> !! knockdown [%] N<br>
!align="right"| mi/shRNA-name !! sequence !! BSsequence !! number of BS<br> !! perfect<br><br> !! bulged<br><br> !! bulge size<br> !! seed type<br> !! 3' score<br> !! AU score<br> !! knockdown [%] P<br> !! experi- mental conditions<br> !! knockdown [%] N<br>
|-
|-
-
|align="right"| MiR122_99 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATTGTCACA CTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  || 1 || ||
+
|align="right"| MiR122_99 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATTGTCACA CTCCA || 1 || 1 || 0 || 0 || 0 || 0 || 0  || 1 || - || -
|-
|-
-
|align="right"| MiR122_101 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGAAGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 ||  0.624 || 0.85 || || 0.21
+
|align="right"| MiR122_101 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGAAGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 ||  0.624 || 0.85 || - || 0.21
|-
|-
-
|align="right"| MiR122_105 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576  || 0.81 || || 0.25
+
|align="right"| MiR122_105 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 2 || 0 || 1 || 4 || 3 || 7.5 || 0.576  || 0.81 || - || 0.25
|-
|-
-
|align="right"| MiR122_106 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 || 0.92 || || 0.13
+
|align="right"| MiR122_106 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.595 || 0.92 || - || 0.13
|-
|-
-
|align="right"| MiR122_107 || TGGAGTGTGACAATGGTGT TTGT || GACTAAGGCTGCTCCATCA ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 || 0.69 || || 0.36
+
|align="right"| MiR122_107 || TGGAGTGTGACAATGGTGT TTGT || GACTAAGGCTGCTCCATCA ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.597 || 0.69 || - || 0.36
|-
|-
-
|align="right"| MiR122_108 || TGGAGTGTGACAATGGTGT TTGT || GCAATGGAGAGTCACCTAG ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.08 || || 0.96
+
|align="right"| MiR122_108 || TGGAGTGTGACAATGGTGT TTGT || GCAATGGAGAGTCACCTAG ACACTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.08 || - || 0.96
|-
|-
-
|align="right"| MiR122_109 || TGGAGTGTGACAATGGTGT TTGT || GGCCAGCACCATTTCACAC ACACTCCT || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.72 || || 0.33
+
|align="right"| MiR122_109 || TGGAGTGTGACAATGGTGT TTGT || GGCCAGCACCATTTCACAC ACACTCCT || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.624 || 0.72 || - || 0.33
|-
|-
-
|align="right"| MiR122_110 || TGGAGTGTGACAATGGTGT TTGT || GCCCCTGATGGGGGCGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 || 0.28 || || 0.76
+
|align="right"| MiR122_110 || TGGAGTGTGACAATGGTGT TTGT || GCCCCTGATGGGGGCGACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.6 || 0.28 || - || 0.76
|-
|-
-
|align="right"| MiR122_111 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.58 || || 0.47
+
|align="right"| MiR122_111 || TGGAGTGTGACAATGGTGT TTGT || GACTTGAGCAGAACAAACA CTCCA || 1 || 0 || 1 || 4 || 3 || 7.5 || 0.603 || 0.58 || - || 0.47
|-
|-
-
|align="right"| MiR122_112 || TGGAGTGTGACAATGGTGT TTGT || GCAAATCATGATCAAAAAC ACTCCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 || 0.34 || || 0.7
+
|align="right"| MiR122_112 || TGGAGTGTGACAATGGTGT TTGT || GCAAATCATGATCAAAAAC ACTCCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.336 || 0.34 || - || 0.7
|-
|-
-
|align="right"| MiR122_132 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGTCGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 || 0.82 || || 0.23
+
|align="right"| MiR122_132 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGTCGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 1.5 || 0.327 || 0.82 || - || 0.23
|-
|-
-
|align="right"| MiR122_133 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 || 0.83 || || 0.22
+
|align="right"| MiR122_133 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 4 || 0.314 || 0.83 || - || 0.22
|-
|-
-
|align="right"| MiR122_134 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 || 0.77 || || 0.28
+
|align="right"| MiR122_134 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATACGAACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2.5 || 0.314 || 0.77 || - || 0.28
|-
|-
-
|align="right"| MiR122_135 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCAGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 || 0.76 || || 0.29
+
|align="right"| MiR122_135 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCAGACA CTCCA || 1 || 0 || 0 || 0 || 3 || 2 || 0.327 || 0.76 || - || 0.29
|-
|-
-
|align="right"| MiR122_158 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCTACA CTCCA || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 || 0.82 ||  || 0.23
+
|align="right"| MiR122_158 || TGGAGTGTGACAATGGTGT TTGT || GACAAACACCATGCCTACA CTCCA || 1 || 0 || 0 || 0 || 2 || 2.5 || 0.221 || 0.82 ||- || 0.23
|-
|-
-
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 || || ||
+
|align="right"| sAg_19_bs_r10_12_acg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGCATTTGTTC || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.442 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0.492 || || ||
+
|align="right"| sAg_19_bs_r10_12_taa_fw || GAACAAATGGCACTAGTAA || TTACTAGTAACATTTGTTC || 1 || 0 || 1 || 2 || 2 || 6 || 0.492 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.442 || || ||
+
|align="right"| sAg_19_bs_r9_12_acgg_fw || GAACAAATGGCACTAGTAA || TTACTAGACGGATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.442 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.495 || || ||
+
|align="right"| sAg_19_bs_r9_12_atgt_fw || GAACAAATGGCACTAGTAA || TTACTAGATGTATTTGTTC || 1 || 0 || 1 || 4 || 2 || 5.5 || 0.495 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.442 || || ||
+
|align="right"| sAg_19_bs_m10cg_fw || GAACAAATGGCACTAGTAA || TTACTAGTGGCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.442 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.496 || || ||
+
|align="right"| sAg_19_bs_m10ca_fw || GAACAAATGGCACTAGTAA || TTACTAGTGACATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6.5 || 0.496 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.442 || || ||
+
|align="right"| sAg_19_bs_m11gc_fw || GAACAAATGGCACTAGTAA || TTACTAGTCCCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.442 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.466 || || ||
+
|align="right"| sAg_19_bs_m11ga_fw || GAACAAATGGCACTAGTAA || TTACTAGTACCATTTGTTC || 1 || 0 || 1 || 1 || 2 || 6 || 0.466 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0.442 || || ||
+
|align="right"| sAg_19_bs_onlyseed_fw_E || GAACAAATGGCACTAGTAA || AATGATCACGGATTTGTTC || 1 || 0 || 0 || 0 || 2 || 0 || 0.442 || - || - || -
|-
|-
-
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || ||
+
|align="right"| sAg_19_bs_p_fw_E || GAACAAATGGCACTAGTAA || TTACTAGTGCCATTTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || - || - || -
|-
|-
-
|align="right"| sag_25_1 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || || ||
+
|align="right"| sag_25_1 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC || 2 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || - || - || -
|-
|-
-
|align="right"| sag_25_2 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC ATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || || ||
+
|align="right"| sag_25_2 || GAACAAATGGCACTAGTAA ACTGAG || ATAATTTGTTCATTTGTTC ATTTGTTC || 3 || 0 || 0 || 0 || 2 || 1.5 || 0.491 || - || - || -
|-  ||
|-  ||
-
|align="right"| sag_25_3 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || ||
+
|align="right"| sag_25_3 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || - || - || -
|-
|-
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 ||  ||  ||   
|align="right"| sag_25_4 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 1 || 3 || 8.5 || 0.587 ||  ||  ||   
|-
|-
-
|align="right"| sag_25_5 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 || || ||
+
|align="right"| sag_25_5 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 2 || 3 || 8 || 0.587 || - || - || -
|-
|-
-
|align="right"| sag_25_6 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 || || ||
+
|align="right"| sag_25_6 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 3 || 3 || 7.5 || 0.587 || - || - || -
|-
|-
-
|align="right"| sag_25_7 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 || || ||
+
|align="right"| sag_25_7 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 1 || 4 || 3 || 7 || 0.587 || - || - || -
|-
|-
-
|align="right"| sag_25_8 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 || || ||
+
|align="right"| sag_25_8 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.603 || - || - || -
|-
|-
-
|align="right"| sag_25_9 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 || || ||
+
|align="right"| sag_25_9 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 2 || 0.305 || - || - || -
|-
|-
-
|align="right"| sag_25_10 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 || || ||
+
|align="right"| sag_25_10 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 2.5 || 0.69 || - || - || -
|-
|-
-
|align="right"| sag_25_11 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || || ||
+
|align="right"| sag_25_11 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || - || - || -
|-
|-
-
|align="right"| sag_25_12 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 || || ||
+
|align="right"| sag_25_12 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCAATTATAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 2 || 0.526 || - || - || -
|-
|-
-
|align="right"| sag_25_13 || GAACAAATGGCACTAGTAA ACTGAG || TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 || || ||
+
|align="right"| sag_25_13 || GAACAAATGGCACTAGTAA ACTGAG || TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 3 || 7 || 0.305 || - || - || -
|-
|-
-
|align="right"| sag_25_14 || GAACAAATGGCACTAGTAA ACTGAG || CTGAATATAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 || || ||
+
|align="right"| sag_25_14 || GAACAAATGGCACTAGTAA ACTGAG || CTGAATATAGTGAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 4 || 0.603 || - || - || -
|-
|-
-
|align="right"| sag_25_15 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTACCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 || || ||
+
|align="right"| sag_25_15 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTACCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 4 || 0.497 || - || - || -
|-
|-
-
|align="right"| sag_25_16 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 || || ||
+
|align="right"| sag_25_16 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.366 || - || - || -
|-
|-
-
|align="right"| sag_25_17 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACATTGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || || ||
+
|align="right"| sag_25_17 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACATTGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.226 || - || - || -
|-
|-
-
|align="right"| sag_25_18 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 || || ||
+
|align="right"| sag_25_18 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.226 || - || - || -
|-
|-
-
|align="right"| sag_25_20 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 || || ||
+
|align="right"| sag_25_20 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.69 || - || - || -
|-
|-
-
|align="right"| sag_25_21 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 || || ||
+
|align="right"| sag_25_21 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 7 || 0.526 || - || - || -
|-
|-
-
|align="right"| sag_25_23 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCATAGATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 || || ||
+
|align="right"| sag_25_23 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCATAGATAATTTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 1 || 3 || 0.69 || - || - || -
|-
|-
-
|align="right"| sag_25_24 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 || || ||
+
|align="right"| sag_25_24 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC || 1 || 0 || 0 || 0 || 1 || 5 || 0.497 || - || - || -
|-
|-
-
|align="right"| sag_25_25 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 || || ||
+
|align="right"| sag_25_25 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC || 1 || 0 || 0 || 0 || 1 || 7 || 0.366 || - || - || -
|-
|-
-
|align="right"| sag_25_26 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 || || ||
+
|align="right"| sag_25_26 || GAACAAATGGCACTAGTAA ACTGAG || CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC || 1 || 0 || 0 || 0 || 2 || 4 || 0.348 || - || - || -
|-
|-
-
|align="right"| sag_25_27 || GAACAAATGGCACTAGTAA ACTGAG || CTTTTACTAGAAAAATTTG TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 || || ||
+
|align="right"| sag_25_27 || GAACAAATGGCACTAGTAA ACTGAG || CTTTTACTAGAAAAATTTG TTGAAUUUAGCC || 1 || 0 || 0 || 0 || 2 || 6 || 0.51 || - || - || -
|-
|-
-
|align="right"| sag_25_28 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 || || ||
+
|align="right"| sag_25_28 || GAACAAATGGCACTAGTAA ACTGAG || CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC || 1 || 0 || 0 || 0 || 2 || 5 || 0.226 || - || - || -
|-
|-
-
|align="right"| sag_25_29 || GAACAAATGGCACTAGTAA ACTGAG || GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 || || ||
+
|align="right"| sag_25_29 || GAACAAATGGCACTAGTAA ACTGAG || GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 6 || 0.603 || - || - || -
|-
|-
-
|align="right"| sag_25_30 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 || || ||
+
|align="right"| sag_25_30 || GAACAAATGGCACTAGTAA ACTGAG || AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC || 1 || 0 || 0 || 0 || 3 || 5 || 0.603 || - || - || -
|-
|-
-
|align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 || || ||
+
|align="right"| haat_bs_p_fw || AAACATGCCTAAACGCTTC || GAAGCGTTTAGGCATGTTT || 1 || 1 || 0 || 0 || 0 || 0 || 0 || - || - || -
|-
|-
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || 0.63 || h1 promoter || 0.36
|align="right"| haat_bs_r10_12_aat_fw || AAACATGCCTAAACGCTTC || GAAGCGTAATGGCATGTTT || 1 || 0 || 1 || 3 || 2 || 5.5 || 0.799 || 0.63 || h1 promoter || 0.36
Line 152: Line 152:
|-
|-
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter || 0.96
|align="right"| haat_bs_onlyseed_fw || AAACATGCCTAAACGCTTC || CTTCGCAAATCGCATGTTT || 1 || 0 || 1 || 0 || 2 || 2 || 0.799 || 0 || u6 promoter || 0.96
 +
|-
 +
|align="right"| sag_25_perfect_BS || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGCCAT TTGTTC || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 1 || miMeasure || 0.49
 +
|-
 +
|align="right"| sag_25_10-12_ACG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGCAT TTGTTC || 1 || 0 || 1 || 3 || 2 || 7.5 || 0.288 || 0.48 || miMeasure || 1.02
 +
|-
 +
|align="right"| sag_25_11-12_AA || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTAACAT TTGTTC || 1 || 0 || 1 || 2 || 2 || 8 || 0.33 || 0.47 || miMeasure || 0.98
 +
|-
 +
|align="right"| sag_25_9-12_ACGG || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGACGGAT TTGTTC || 1 || 0 || 1 || 4 || 2 || 7.5 || 0.288 || 0.5 || miMeasure || 1.03
 +
|-
 +
|align="right"| sag_25_9-12_ATGT || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGATGTAT TTGTTC || 1 || 0 || 1 || 4 || 2 || 7.5 || 0.332 || 0.47 || miMeasure || 1.06
 +
|-
 +
|align="right"| sag_25_ 10_G || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGGCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8.5 || 0.288 || 0.46 || miMeasure || 0.99
 +
|-
 +
|align="right"| sag_25_10_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTGACAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8.5 || 0.31 || 0.49 || miMeasure || 0.59
 +
|-
 +
|align="right"| sag_25_11_A || GAACAAATGGCACTAGTAA ACTGAG || CTCAGTTTACTAGTACCAT TTGTTC || 1 || 0 || 1 || 1 || 2 || 8 || 0.308 || 0.83 || miMeasure || 0.91
|}
|}
{{:Team:Heidelberg/Single_Bottom}}
{{:Team:Heidelberg/Single_Bottom}}

Latest revision as of 03:49, 28 October 2010

Data Overview

mi/shRNA-name sequence BSsequence number of BS
 perfect

 bulged

 bulge size
 seed type
 3' score
 AU score
 knockdown [%] P
 experi- mental conditions
 knockdown [%] N
MiR122_99 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATTGTCACA CTCCA 1 1 0 0 0 0 0 1 - -
MiR122_101 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGAAGACA CTCCA 1 0 1 4 3 7.5 0.624 0.85 - 0.21
MiR122_105 TGGAGTGTGACAATGGTGT TTGT GACTTGAGCAGAACAAACA CTCCA 2 0 1 4 3 7.5 0.576 0.81 - 0.25
MiR122_106 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATACGGACA CTCCAGAGACACAAACACC ATGAAGACACTCCA 1 0 1 4 3 7.5 0.595 0.92 - 0.13
MiR122_107 TGGAGTGTGACAATGGTGT TTGT GACTAAGGCTGCTCCATCA ACACTCCA 1 0 1 4 3 7.5 0.597 0.69 - 0.36
MiR122_108 TGGAGTGTGACAATGGTGT TTGT GCAATGGAGAGTCACCTAG ACACTCCA 1 0 1 4 3 7.5 0.603 0.08 - 0.96
MiR122_109 TGGAGTGTGACAATGGTGT TTGT GGCCAGCACCATTTCACAC ACACTCCT 1 0 1 4 3 7.5 0.624 0.72 - 0.33
MiR122_110 TGGAGTGTGACAATGGTGT TTGT GCCCCTGATGGGGGCGACA CTCCA 1 0 1 4 3 7.5 0.6 0.28 - 0.76
MiR122_111 TGGAGTGTGACAATGGTGT TTGT GACTTGAGCAGAACAAACA CTCCA 1 0 1 4 3 7.5 0.603 0.58 - 0.47
MiR122_112 TGGAGTGTGACAATGGTGT TTGT GCAAATCATGATCAAAAAC ACTCCC 1 0 0 0 2 5 0.336 0.34 - 0.7
MiR122_132 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGTCGACA CTCCA 1 0 0 0 3 1.5 0.327 0.82 - 0.23
MiR122_133 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCCAACA CTCCA 1 0 0 0 3 4 0.314 0.83 - 0.22
MiR122_134 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATACGAACA CTCCA 1 0 0 0 3 2.5 0.314 0.77 - 0.28
MiR122_135 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCAGACA CTCCA 1 0 0 0 3 2 0.327 0.76 - 0.29
MiR122_158 TGGAGTGTGACAATGGTGT TTGT GACAAACACCATGCCTACA CTCCA 1 0 0 0 2 2.5 0.221 0.82 - 0.23
sAg_19_bs_r10_12_acg_fw GAACAAATGGCACTAGTAA TTACTAGACGCATTTGTTC 1 0 1 3 2 5.5 0.442 - - -
sAg_19_bs_r10_12_taa_fw GAACAAATGGCACTAGTAA TTACTAGTAACATTTGTTC 1 0 1 2 2 6 0.492 - - -
sAg_19_bs_r9_12_acgg_fw GAACAAATGGCACTAGTAA TTACTAGACGGATTTGTTC 1 0 1 4 2 5.5 0.442 - - -
sAg_19_bs_r9_12_atgt_fw GAACAAATGGCACTAGTAA TTACTAGATGTATTTGTTC 1 0 1 4 2 5.5 0.495 - - -
sAg_19_bs_m10cg_fw GAACAAATGGCACTAGTAA TTACTAGTGGCATTTGTTC 1 0 1 1 2 6.5 0.442 - - -
sAg_19_bs_m10ca_fw GAACAAATGGCACTAGTAA TTACTAGTGACATTTGTTC 1 0 1 1 2 6.5 0.496 - - -
sAg_19_bs_m11gc_fw GAACAAATGGCACTAGTAA TTACTAGTCCCATTTGTTC 1 0 1 1 2 6 0.442 - - -
sAg_19_bs_m11ga_fw GAACAAATGGCACTAGTAA TTACTAGTACCATTTGTTC 1 0 1 1 2 6 0.466 - - -
sAg_19_bs_onlyseed_fw_E GAACAAATGGCACTAGTAA AATGATCACGGATTTGTTC 1 0 0 0 2 0 0.442 - - -
sAg_19_bs_p_fw_E GAACAAATGGCACTAGTAA TTACTAGTGCCATTTGTTC 1 1 0 0 0 0 0 - - -
sag_25_1 GAACAAATGGCACTAGTAA ACTGAG ATAATTTGTTCATTTGTTC 2 0 0 0 2 1.5 0.491 - - -
sag_25_2 GAACAAATGGCACTAGTAA ACTGAG ATAATTTGTTCATTTGTTC ATTTGTTC 3 0 0 0 2 1.5 0.491 - - -
sag_25_3 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGCCATTTG TTCAAAUAUAGCC 1 1 0 0 0 0 0 - - -
sag_25_4 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGCAATTTG TTAAAAUUUAGCC 1 0 1 1 3 8.5 0.587
sag_25_5 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTGAAATTTG TTAAAAUUUAGCC 1 0 1 2 3 8 0.587 - - -
sag_25_6 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGTAAAATTTG TTAAAAUUUAGCC 1 0 1 3 3 7.5 0.587 - - -
sag_25_7 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAAATTTG TTAAAAUUUAGCC 1 0 1 4 3 7 0.587 - - -
sag_25_8 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAATTATAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 2 0.603 - - -
sag_25_9 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAGCCGCAAATTTG TTAAAGGCCCGCC 1 0 0 0 3 2 0.305 - - -
sag_25_10 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAGCTATAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 2.5 0.69 - - -
sag_25_11 GAACAAATGGCACTAGTAA ACTGAG AGTTTACGCCGTAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 4 0.226 - - -
sag_25_12 GAACAAATGGCACTAGTAA ACTGAG CTGGGCAATTATAAATTTG TTGAAAUUUAGCC 1 0 0 0 2 2 0.526 - - -
sag_25_13 GAACAAATGGCACTAGTAA ACTGAG TCCTTACTAGTGCAATTTG TTAAAGGCCCGCC 1 0 0 0 3 7 0.305 - - -
sag_25_14 GAACAAATGGCACTAGTAA ACTGAG CTGAATATAGTGAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 4 0.603 - - -
sag_25_15 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTACCTAATTTTG TTAAAAUCCGGCC 1 0 0 0 1 4 0.497 - - -
sag_25_16 GAACAAATGGCACTAGTAA ACTGAG CTGGGCCTAGTGGATTTTG TTAAAGGCCCGCC 1 0 0 0 1 5 0.366 - - -
sag_25_17 GAACAAATGGCACTAGTAA ACTGAG AGTTTACATTGCAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 4 0.226 - - -
sag_25_18 GAACAAATGGCACTAGTAA ACTGAG CTGGGACTAGTGCAATTTG TTGAAGGCCCGCC 1 0 0 0 2 6 0.226 - - -
sag_25_20 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 7 0.69 - - -
sag_25_21 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGAAAAATTTG TTGAAAUUUAGCC 1 0 0 0 2 7 0.526 - - -
sag_25_23 GAACAAATGGCACTAGTAA ACTGAG CTGGGCATAGATAATTTTG TTAAAAUUUAGCC 1 0 0 0 1 3 0.69 - - -
sag_25_24 GAACAAATGGCACTAGTAA ACTGAG CTGGTACTAGCTAATTTTG TTAAAAUCCGGCC 1 0 0 0 1 5 0.497 - - -
sag_25_25 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTAGCCGATTTTG TTAAAGGCCCGCC 1 0 0 0 1 7 0.366 - - -
sag_25_26 GAACAAATGGCACTAGTAA ACTGAG CTGGGCCTAGAAAAATTTG TTGAAAUCCGGCC 1 0 0 0 2 4 0.348 - - -
sag_25_27 GAACAAATGGCACTAGTAA ACTGAG CTTTTACTAGAAAAATTTG TTGAAUUUAGCC 1 0 0 0 2 6 0.51 - - -
sag_25_28 GAACAAATGGCACTAGTAA ACTGAG CTGGTACTAGGCAAATTTG TTGAAGGCCCGCC 1 0 0 0 2 5 0.226 - - -
sag_25_29 GAACAAATGGCACTAGTAA ACTGAG GCTTTACTAGAAAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 6 0.603 - - -
sag_25_30 GAACAAATGGCACTAGTAA ACTGAG AGTTTACTTTAAAAATTTG TTAAAAUUUAGCC 1 0 0 0 3 5 0.603 - - -
haat_bs_p_fw AAACATGCCTAAACGCTTC GAAGCGTTTAGGCATGTTT 1 1 0 0 0 0 0 - - -
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799 0.63 h1 promoter 0.36
haat_bs_r10_12_aat_fw AAACATGCCTAAACGCTTC GAAGCGTAATGGCATGTTT 1 0 1 3 2 5.5 0.799 0.55 u6 promoter 0.4
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749 0.32 h1 promoter 0.66
haat_bs_r10_12_agc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCGGCATGTTT 1 0 1 3 2 5.5 0.749 0.37 u6 promoter 0.54
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799 0.9 h1 promoter 0.13
haat_bs_m10at_fw AAACATGCCTAAACGCTTC GAAGCGTTTTGGCATGTTT 1 0 1 1 2 6.5 0.799 0.9 u6 promoter 0.11
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773 0.78 h1 promoter 0.24
haat_bs_m10ac_fw AAACATGCCTAAACGCTTC GAAGCGTTTCGGCATGTTT 1 0 1 1 2 6.5 0.773 0.77 u6 promoter 0.21
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.69 h1 promoter 0.32
haat_bs_m11ta_fw AAACATGCCTAAACGCTTC GAAGCGTTAAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.74 u6 promoter 0.24
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.64 h1 promoter 0.37
haat_bs_m11tg_fw AAACATGCCTAAACGCTTC GAAGCGTTGAGGCATGTTT 1 0 1 1 2 1.5 0.38 0.66 u6 promoter 0.31
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38 0.27 h1 promoter 0.7
haat_bs_r9_12_aatc_fw AAACATGCCTAAACGCTTC GAAGCGTAATCGCATGTTT 1 0 1 4 2 1.5 0.38 0.48 u6 promoter 0.45
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38 0.04 h1 promoter 0.92
haat_bs_r9_12_agcc_fw AAACATGCCTAAACGCTTC GAAGCGTAGCCGCATGTTT 1 0 1 4 2 1.5 0.38 0.04 u6 promoter 0.8
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0 1 0 2 2 0.799 0.15 h1 promoter 0.81
haat_bs_onlyseed_fw AAACATGCCTAAACGCTTC CTTCGCAAATCGCATGTTT 1 0 1 0 2 2 0.799 0 u6 promoter 0.96
sag_25_perfect_BS GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTGCCAT TTGTTC 1 1 0 0 0 0 0 1 miMeasure 0.49
sag_25_10-12_ACG GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGACGCAT TTGTTC 1 0 1 3 2 7.5 0.288 0.48 miMeasure 1.02
sag_25_11-12_AA GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTAACAT TTGTTC 1 0 1 2 2 8 0.33 0.47 miMeasure 0.98
sag_25_9-12_ACGG GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGACGGAT TTGTTC 1 0 1 4 2 7.5 0.288 0.5 miMeasure 1.03
sag_25_9-12_ATGT GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGATGTAT TTGTTC 1 0 1 4 2 7.5 0.332 0.47 miMeasure 1.06
sag_25_ 10_G GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTGGCAT TTGTTC 1 0 1 1 2 8.5 0.288 0.46 miMeasure 0.99
sag_25_10_A GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTGACAT TTGTTC 1 0 1 1 2 8.5 0.31 0.49 miMeasure 0.59
sag_25_11_A GAACAAATGGCACTAGTAA ACTGAG CTCAGTTTACTAGTACCAT TTGTTC 1 0 1 1 2 8 0.308 0.83 miMeasure 0.91

Retrieved from "http://2010.igem.org/Team:Heidelberg/Modeling/Data_Overview"