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Team:Freiburg Software/User/Robots/Alignment
From 2010.igem.org
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| - | In the main menu you can either select the default distance function or specify your own. | + | In the main menu you can either select the default distance function or specify your own. At this point the robot only supports one value for each substitution. Transition matrices will be available in a later version. |
Now click "Send" and Alignobot will calculate your alignment and display it: | Now click "Send" and Alignobot will calculate your alignment and display it: | ||
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Revision as of 11:15, 22 October 2010
Alignobot
With Alignobot you can compare sequences by creating global and local alignments. Alignobot can be found at alignobot@appspot.com. Before you start an alignment be sure that you have 2 sequences selected in the workspace.
Global Alignments
Alignobot finds global alignments using the Needleman/Wunsch Algorithm.
In the main menu you can either select the default distance function or specify your own. At this point the robot only supports one value for each substitution. Transition matrices will be available in a later version. Now click "Send" and Alignobot will calculate your alignment and display it:
Note: The display may slightly differ from this picture due to ongoing development.
