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Team:Freiburg Software/User/Robots/Alignment
From 2010.igem.org
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Now click "Send" and Alignobot will calculate your alignment and display it: | Now click "Send" and Alignobot will calculate your alignment and display it: | ||
</p> | </p> | ||
| - | <div align="center style="margin: 10px 10px 10px 10px; width: | + | <div align="center style="margin: 10px 10px 10px 10px; width: 300;"> |
| - | <img src="https://static.igem.org/mediawiki/2010/9/93/Freiburg_10_software_Global_alignment_display.png" /> | + | <img src="https://static.igem.org/mediawiki/2010/9/93/Freiburg_10_software_Global_alignment_display.png"/> |
| + | <p class="caption">Note: The display may slightly differ from this picture due to ongoing development.</p> | ||
</div> | </div> | ||
</div> | </div> | ||
</html> | </html> | ||
Revision as of 11:06, 22 October 2010
Alignobot
With Alignobot you can compare sequences by creating global and local alignments. Alignobot can be found at alignobot@appspot.com. Before you start an alignment be sure that you have 2 sequences selected in the workspace.
Global Alignments
Alignobot finds global alignments using the Needleman/Wunsch Algorithm.
In the main menu you can either select the default distance function or specify your own. Now click "Send" and Alignobot will calculate your alignment and display it:
Note: The display may slightly differ from this picture due to ongoing development.
