http://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&feed=atom&action=historyTeam:Edinburgh/Modelling/Tools - Revision history2024-03-28T21:09:57ZRevision history for this page on the wikiMediaWiki 1.16.5http://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=205376&oldid=prevJRWK at 02:22, 28 October 20102010-10-28T02:22:39Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh" class="dir">home</a></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh" class="dir">home</a></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh/Project/References">references</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh/Project/References">references</a></li></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> <li><a href="https://2010.igem.org/Team:Edinburgh/Human/SelfReflection">self-reflection</a></li></del></div></td><td colspan="2"> </td></tr>
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</table>JRWKhttp://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=202899&oldid=prevJRWK at 00:46, 28 October 20102010-10-28T00:46:28Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><b>Figure 1:</b> A screenshot of the custom Java-based Kappa simulator and visualiser used for the majority of the modelling work for the project.</p><br><br></center></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p><b>Figure 1:</b> A screenshot of the custom Java-based Kappa simulator and visualiser used for the majority of the modelling work for the project.</p><br><br></center></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>The modelling component for the 2010 University of Edinburgh iGEM project used a number of Kappa-based stochastic modelling tools, including <a href="http://rulebase.org/">RuleBase</a> and <a href="http://www.pps.jussieu.fr/~jkrivine/binaires/Telechargements/Kappa_simulator_and_static_analyzer.html">simplx</a>. In addition we made extensive use of a custom Java-based Kappa simulator and visualiser (<a href="https://static.igem.org/mediawiki/2010/9/9c/Simulator-channels-blend.png">Figure 1</a>). This simulator started out as one of the <del class="diffchange diffchange-inline">output </del>of the degree project of one of our modellers, and was extended to suit the <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">intra-</a> and <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">intercellular</a> modelling of the <a href="https://2010.igem.org/Team:Edinburgh/Bacterial">FORTH</a> light communication framework.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>The modelling <ins class="diffchange diffchange-inline"><b></ins>component<ins class="diffchange diffchange-inline"></b> </ins>for the 2010 University of Edinburgh iGEM project used a number of Kappa-based stochastic modelling tools, including <a href="http://rulebase.org/">RuleBase</a> and <a href="http://www.pps.jussieu.fr/~jkrivine/binaires/Telechargements/Kappa_simulator_and_static_analyzer.html">simplx</a>. In addition we made <ins class="diffchange diffchange-inline"><b></ins>extensive<ins class="diffchange diffchange-inline"></b> </ins>use of a custom Java-based Kappa simulator and visualiser (<a href="https://static.igem.org/mediawiki/2010/9/9c/Simulator-channels-blend.png">Figure 1</a>). This simulator started out as one of the <ins class="diffchange diffchange-inline">outputs </ins>of the degree project of one of our modellers, and was <ins class="diffchange diffchange-inline"><b></ins>extended<ins class="diffchange diffchange-inline"></b> </ins>to suit the <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">intra-</a> and <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">intercellular</a> modelling of the <a href="https://2010.igem.org/Team:Edinburgh/Bacterial">FORTH</a> light communication framework.</p></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool simulates an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based communication between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate selection of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool <ins class="diffchange diffchange-inline"><b></ins>simulates<ins class="diffchange diffchange-inline"></b> </ins>an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based <ins class="diffchange diffchange-inline"><b></ins>communication<ins class="diffchange diffchange-inline"></b> </ins>between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate <ins class="diffchange diffchange-inline"><b></ins>selection<ins class="diffchange diffchange-inline"></b> </ins>of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></div></td></tr>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="http://www.macteria.co.uk/igem10/tools/download.html">here</a>.</p><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="http://www.macteria.co.uk/igem10/tools/download.html">here</a>.</p><br></div></td></tr>
</table>JRWKhttp://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=202097&oldid=prevJRWK at 00:16, 28 October 20102010-10-28T00:16:24Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool simulates an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based communication between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate selection of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool simulates an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based communication between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate selection of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="http://www.macteria.co.uk/igem10/tools/download.html<del class="diffchange diffchange-inline">">here</a> , and the finished intracellular model is available <a href="</del>">here</a>.</p><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="http://www.macteria.co.uk/igem10/tools/download.html">here</a>.</p><br></div></td></tr>
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</table>JRWKhttp://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=201562&oldid=prevJRWK at 23:58, 27 October 20102010-10-27T23:58:26Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><a name="Tools" id="Tools"></a><h2>Tools</h2><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><a name="Tools" id="Tools"></a><h2>Tools</h2><br></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>The modelling component for the 2010 University of Edinburgh iGEM project used a number of Kappa-based stochastic modelling tools, including <a href="http://rulebase.org/">RuleBase</a> and <a href="http://www.pps.jussieu.fr/~jkrivine/binaires/Telechargements/Kappa_simulator_and_static_analyzer.html">simplx</a>. In addition we made extensive use of a custom Java-based Kappa simulator and visualiser. This simulator started out as one of the output of the degree project of one of our modellers, and was extended to suit the <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">intra-</a> and <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">intercellular</a> modelling of the <a href="https://2010.igem.org/Team:Edinburgh/Bacterial">FORTH</a> light communication framework.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><center><br><br><p><img src="https://static.igem.org/mediawiki/2010/9/9c/Simulator-channels-blend.png" width="600px"></p><br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p><b>Figure 1:</b> A screenshot of the custom Java-based Kappa simulator and visualiser used for the majority of the modelling work for the project.</p><br><br></center></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>The modelling component for the 2010 University of Edinburgh iGEM project used a number of Kappa-based stochastic modelling tools, including <a href="http://rulebase.org/">RuleBase</a> and <a href="http://www.pps.jussieu.fr/~jkrivine/binaires/Telechargements/Kappa_simulator_and_static_analyzer.html">simplx</a>. In addition we made extensive use of a custom Java-based Kappa simulator and visualiser <ins class="diffchange diffchange-inline">(<a href="https://static.igem.org/mediawiki/2010/9/9c/Simulator-channels-blend.png">Figure 1</a>)</ins>. This simulator started out as one of the output of the degree project of one of our modellers, and was extended to suit the <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">intra-</a> and <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">intercellular</a> modelling of the <a href="https://2010.igem.org/Team:Edinburgh/Bacterial">FORTH</a> light communication framework.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool simulates an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based communication between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate selection of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool simulates an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based communication between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate selection of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="">here</a> , and the finished intracellular model is available <a href="">here</a>.</p><br></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="<ins class="diffchange diffchange-inline">http://www.macteria.co.uk/igem10/tools/download.html</ins>">here</a> , and the finished intracellular model is available <a href="">here</a>.</p><br></div></td></tr>
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</table>JRWKhttp://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=195345&oldid=prevJRWK at 20:32, 27 October 20102010-10-27T20:32:32Z<p></p>
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><a name="Tools" id="Tools"></a><h2>Tools</h2><br></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div><a name="Tools" id="Tools"></a><h2>Tools</h2><br></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"><br></del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><p><del class="diffchange diffchange-inline">***</del></p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><p><ins class="diffchange diffchange-inline">The modelling component for the 2010 University of Edinburgh iGEM project used a number of Kappa-based stochastic modelling tools, including <a href="http://rulebase.org/">RuleBase</a> and <a href="http://www.pps.jussieu.fr/~jkrivine/binaires/Telechargements/Kappa_simulator_and_static_analyzer.html">simplx</a>. In addition we made extensive use of a custom Java-based Kappa simulator and visualiser. This simulator started out as one of the output of the degree project of one of our modellers, and was extended to suit the <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">intra-</a> and <a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">intercellular</a> modelling of the <a href="https://2010.igem.org/Team:Edinburgh/Bacterial">FORTH</a> light communication framework.</ins></p<ins class="diffchange diffchange-inline">></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p>The Edinburgh iGEM 2010 modelling tool simulates an extended variant of Kappa capable of representing spatial location of agents and events. These extensions made the tool particularly suitable to represent the signalling model in Kappa. Individual bacteria in a 2D biofilm were represented as a hexagonal mesh. Each cell in the mesh represented a single bacterium, running the full intracellular model. Light based communication between adjecent bacteria was represented by the transport of agents representing light 'particles/photons' from one bacteria to a neighbour. By appropriate selection of creation, transport, light sensing and degradation rates, the stimulation of one bacterium by light emitted by its neighbours can be modelled.</p></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><p>The Edinburgh iGEM 2010 modelling tool can be obtained from <a href="">here</a> , and the finished intracellular model is available <a href="">here</a>.</p><br></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline"><br</ins>></div></td></tr>
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</table>JRWKhttp://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=163879&oldid=prevJRWK at 18:20, 26 October 20102010-10-26T18:20:33Z<p></p>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>background-image:url(<del class="diffchange diffchange-inline">"</del>https://static.igem.org/mediawiki/2010/<del class="diffchange diffchange-inline">a</del>/<del class="diffchange diffchange-inline">a8</del>/Ed10-<del class="diffchange diffchange-inline">LargePaper</del>.jpg<del class="diffchange diffchange-inline">"</del>);</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>background-image:url(https://static.igem.org/mediawiki/2010/<ins class="diffchange diffchange-inline">9</ins>/<ins class="diffchange diffchange-inline">9e</ins>/Ed10-<ins class="diffchange diffchange-inline">LargePaperRipped</ins>.jpg);</div></td></tr>
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</table>JRWKhttp://2010.igem.org/wiki/index.php?title=Team:Edinburgh/Modelling/Tools&diff=137896&oldid=prevJRWK at 21:53, 24 October 20102010-10-24T21:53:42Z<p></p>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"></ins></div></td></tr>
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<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><div id="windowbox" style="border: .2em solid #660000; padding: 5px; position:fixed; top:50%; right:30px; width:8%;"></ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins style="color: red; font-weight: bold; text-decoration: none;"><span style="color:ivory;">Throughout this wiki there are words in <b>bold</b> that indicate a relevance to <b>human aspects</b>. It will become obvious that <b>human aspects</b> are a part of almost everything in <b>iGEM</b>.</span></ins></div></td></tr>
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</li><br />
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<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a><br />
<ul><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the repressilator</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_producer">red light</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_sensor">red sensor</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Blue_light_producer">blue light</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Blue_light_sensor">blue sensor</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Green_light_producer">green light</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Green_light_sensor">green sensor</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/BioBricks#Bacterial">submitted parts</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Results#Bacterial">results</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/Future">future work</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Bacterial/References">references</a></li><br />
</ul><br />
</li><br />
<br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling" class="dir">modelling BRIDGEs</a><br />
<ul><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Kappa">kappa</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Genomic">the genomic model</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Bacterial">the bacterial model</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Signalling">the signalling model</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Results#Modelling">results</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/Future">future work</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Modelling/References">references</a></li><br />
</ul><br />
</li><br />
<br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human" class="dir">human BRIDGEs</a><br />
<ul><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Aspects">human aspects</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Communication">communication of science</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Terminology">terminology research</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Wiki">wiki</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Conversations">conversations</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Identity">identity</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Collaboration">collaboration</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Branding">branding research</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/SciFi">science fiction writing</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/FutureApps">future applications</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/SelfReflection">self-reflection</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Epic">the epic</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Results#Human">results</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/Future">future work</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Human/References">references</a></li><br />
</ul><br />
</li><br />
<br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook" class="dir">lab notes&nbsp;&nbsp;&nbsp;</a><br />
<ul><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Collaboration">collaboration</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Attribution">attribution</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/BRIDGE">BRIDGE</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Red_light_producer">red light</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Red_light_sensor">red sensor</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Blue_light_producer">blue light</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Blue_light_sensor">blue sensor</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Green_light_producer">green light</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Green_light_sensor">green sensor</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Modelling">modelling</a></li><br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Notebook/Safety">safety</a></li><br />
<li><a href="http://www.openwetware.org/wiki/French_Lab">protocols</a></li><br />
</ul><br />
</li><br />
<br />
<li><a href="https://2010.igem.org/Team:Edinburgh/Acknowledgements" class="dir">acknowledgements</a><br />
</li><br />
<br />
</ul><br />
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<a name="Tools" id="Tools"></a><h2>Tools</h2><br><br />
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<p>***</p><br />
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