Team:Edinburgh/Bacterial/References

From 2010.igem.org

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   <li><a href="http://2010.igem.org/Team:Edinburgh/BioBricks#Genomic">submitted parts</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/BioBricks#Genomic">submitted parts</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Genomic">results</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Genomic">results</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Project/Future">future work</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Project/Future">the future</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Project/References">references</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Project/References">references</a></li>
   </ul>
   </ul>
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a>
  <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial" class="dir">bacterial BRIDGEs</a>
   <ul>
   <ul>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the repressilator</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Core_repressilator">the project</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_producer">red light</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_producer">red light</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_sensor">red sensor</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Red_light_sensor">red sensor</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/BioBricks#Bacterial">submitted parts</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/BioBricks#Bacterial">submitted parts</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Bacterial">results</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Bacterial">results</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Future">future work</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/Future">the future</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/References">references</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Bacterial/References">references</a></li>
   </ul>
   </ul>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Modelling/Tools">tools</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Modelling">results</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Modelling">results</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Modelling/Future">future work</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Modelling/Future">the future</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Modelling/References">references</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Modelling/References">references</a></li>
   </ul>
   </ul>
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human" class="dir">human BRIDGEs</a>
  <li><a href="http://2010.igem.org/Team:Edinburgh/Human" class="dir">human BRIDGEs</a>
   <ul>
   <ul>
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Aspects">human aspects</a></li>
 
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Communication">communication of science</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Communication">communication of science</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Terminology">terminology research</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Branding">iGEM survey</a></li>
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Wiki">wiki</a></li>
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   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Conversations">conversations</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Conversations">conversations</a></li>
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Identity">identity</a></li>
 
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Collaboration">collaboration</a></li>
 
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Branding">branding research</a></li>
 
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/SciFi">science fiction writing</a></li>
 
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/FutureApps">future applications</a></li>
 
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  <li><a href="http://2010.igem.org/Team:Edinburgh/Human/SelfReflection">self-reflection</a></li>
 
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Epic">the epic</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Epic">the epic</a></li>
-
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Human">results</a></li>
+
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/FutureApps">future applications</a></li>
-
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/Future">future work</a></li>
+
   <li><a href="http://2010.igem.org/Team:Edinburgh/Results#Human">further thoughts</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/References">references</a></li>
   <li><a href="http://2010.igem.org/Team:Edinburgh/Human/References">references</a></li>
   </ul>
   </ul>
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<a name="References" id="References"></a><h2>References</h2>
<a name="References" id="References"></a><h2>References</h2>
<br>
<br>
 +
<p><b>Elowitz, M. B. and S. Leibler (2000).</b> A synthetic oscillatory network of transcriptional regulators. <i>Nature</i> <b>403</b>(6767): 335-338.</p>
<p><b>Elowitz, M. B. and S. Leibler (2000).</b> A synthetic oscillatory network of transcriptional regulators. <i>Nature</i> <b>403</b>(6767): 335-338.</p>
<p><b>Danino, T., O. Mondragon-Palomino, et al (2009).</b> A synchronized quorum of genetic clocks. <i>Nature</i> <b>463</b>(7279): 326-330.</p>
<p><b>Danino, T., O. Mondragon-Palomino, et al (2009).</b> A synchronized quorum of genetic clocks. <i>Nature</i> <b>463</b>(7279): 326-330.</p>
<p><b>Garcia-Ojalvo, J., M. B. Elowitz, et al. (2004).</b> Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. <i>Proceedings of the National Academy of Sciences of the United States of America</i> <b>101</b>(30): 10955-10960.</p>
<p><b>Garcia-Ojalvo, J., M. B. Elowitz, et al. (2004).</b> Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. <i>Proceedings of the National Academy of Sciences of the United States of America</i> <b>101</b>(30): 10955-10960.</p>
-
<p><b>A Levskaya, OD Weiner, WA Lim, CA Voigt (2009).</b> Spatiotemporal control of cell signalling using a light-switchable protein interaction. <i>Nature</i> Vol <b>461</b>| 15 October 2009| doi:10.1038/nature08446</p>
 
-
<p><b>YI Wu, D Frey, OI Lungu, A Jaehrig, I Schlichting, et al. (2009).</b> A genetically encoded photoactivatable Rac controls the motility of living cells. <i>Nature</i> Vol <b>461</b>| 3 September 2009| doi:10.1038/nature0824</p>
 
-
<p><b>F Zhang, AM Aravanis, A Adamantidis, et al. (2007).</b> "Circuit-breakers: optical technologies for probing neural signals and systems. <i>Nature</i> Reviews VOLUME <b>8</b> | AUGUST 2007 | 577</p>
 
-
<p><b>Gambetta, G. A. &amp; Lagarias, J. C. (2001).</b> Genetic engineering of phytochrome biosynthesis in bacteria. <i>Proceedings of the National Academy of Sciences of the United States of America</i> <b>98</b>, 10566-10571.</p>
 
-
<p><b>Hirose, Y., Shimada, T., Narikawa, R., Katayama, M. &amp; Ikeuchi, M. (2008).</b> Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. <i>Proceedings of the National Academy of Sciences</i> <b>105</b>, 9528-9533.</p>
 
-
<p><b>Schüttrigkeit, T. A., Kompa, C. K., Salomon, M., Rüdiger, W. &amp; Michel-Beyerle, M. E. (2003).</b> Primary photophysics of the FMN binding LOV2 domain of the plant blue light receptor phototropin of Avena sativa. <i>Chemical Physics</i> <b>294</b>, 501-508.</p>
 
-
Levskaya, A., Chevalier, A. A., Tabor, J. J. & other authors (2005). Synthetic biology: Engineering Escherichia coli to see light. Nature 438, 441-442.
 
-
Fujii, H., Noda, K., Asami, Y., Kuroda, A., Sakata, M. & Tokida, A. (2007). Increase in bioluminescence intensity of firefly luciferase using genetic modification. Analytical Biochemistry 366, 131-136.
+
<p><b>Seliger, H. H., & McElroy, W. D. (1964).</b> The Colors of Firefly Bioluminescence: Enzyme Configuration and Species Specificity. <i>PNAS</i> <b>52</b> (1) 75-81</p>
-
O'Kane, D. J. & Lee, J. (1985). Chemical characterization of lumazine protein from Photobacterium leiognathi: comparison with lumazine protein from Photobacterium phosphoreum. Biochemistry 24, 1467-1475.
+
<p><b>Branchini, B. R., Southworth, T. L., Khattak, N. F., Michelini, E. & Roda, A. (2005).</b> Red- and green-emitting firefly luciferase mutants for bioluminescent reporter applications. <i>Analytical Biochemistry</i> <b>345</b>, 140-148.</p>
 +
<p><b>Branchini, B. R., Ablamsky, D. M., Murtiashaw, M. H., Uzasci, L., Fraga, H. & Southworth, T. L. (2007).</b> Thermostable red and green light-producing firefly luciferase mutants for bioluminescent reporter applications. <i>Analytical Biochemistry</i> <b>361</b>, 253-262.</p>
 +
<p><b>Moradi, A., Hosseinkhani, S., Naderi-Manesh, H., Sadeghizadeh, M. & Alipour, B. S. (2009).</b> Effect of Charge Distribution in a Flexible Loop on the Bioluminescence Color of Firefly Luciferases. <i>Biochemistry</i> <b>48</b>, 575-582.</p>
-
Strickland, D., Moffat, K. & Sosnick, T. R. (2008). Light-activated DNA binding in a designed allosteric protein. Proceedings of the National Academy of Sciences 105, 10709-10714.
+
<p><b>O'Kane, D. J. & Lee, J. (1985).</b> Chemical characterization of lumazine protein from Photobacterium leiognathi: comparison with lumazine protein from Photobacterium phosphoreum. <i>Biochemistry</i> <b>24</b>, 1467-1475.</p>
 +
<p><b>Suadee, C., Nijvipakul, S., et al. (2008).</b> LuxG Is a Functioning Flavin Reductase for Bacterial Luminescence. <i>J. Bacteriol.</i> <b>190</b>(5): 1531-1538</p>
 +
<p><b>Fujii, H., Noda, K., Asami, Y., Kuroda, A., Sakata, M. & Tokida, A. (2007).</b> Increase in bioluminescence intensity of firefly luciferase using genetic modification. <i>Analytical Biochemistry</i> <b>366</b>, 131-136.</p>
 +
<p><b>Shapirol, E., Lu, C., Baneyx, F. (2009).</b> Design and characterization of novel trypsin-resistant firefly luciferases by site-directed mutagenesis. <i>Protein Eng Des Sel</i> <b>22</b>(11): 655-663.</p>
 +
<p><b>Levskaya, A., Chevalier, A. A., Tabor, J. J. & other authors (2005).</b> Synthetic biology: Engineering Escherichia coli to see light. <i>Nature</i> <b>438</b>, 441-442.</p>
 +
<p><b>Gambetta, G. A. &amp; Lagarias, J. C. (2001).</b> Genetic engineering of phytochrome biosynthesis in bacteria. <i>Proceedings of the National Academy of Sciences of the United States of America</i> <b>98</b>, 10566-10571.</p>
 +
<p><b>Levskaya, A., O. D. Weiner, et al. (2009).</b> Spatiotemporal control of cell signalling using a light-switchable protein interaction. <i>Nature</i> Vol <b>461</b></p>
 +
 +
<p><b>Strickland, D., Moffat, K. & Sosnick, T. R. (2008).</b> Light-activated DNA binding in a designed allosteric protein. <i>Proceedings of the National Academy of Sciences</i> <b>105</b>, 10709-10714.</p>
 +
<p><b>Schüttrigkeit, T. A., Kompa, C. K., Salomon, M., Rüdiger, W. &amp; Michel-Beyerle, M. E. (2003).</b> Primary photophysics of the FMN binding LOV2 domain of the plant blue light receptor phototropin of Avena sativa. <i>Chemical Physics</i> <b>294</b>, 501-508.</p>
 +
<p><b>Wu, Y. I., D. Frey, et al. (2009).</b> A genetically encoded photoactivatable Rac controls the motility of living cells. <i>Nature</i> Vol <b>461</b></p>
 +
 +
<p><b>Hirose, Y., Shimada, T., Narikawa, R., Katayama, M. &amp; Ikeuchi, M. (2008).</b> Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. <i>Proceedings of the National Academy of Sciences</i> <b>105</b>, 9528-9533.</p>
 +
<p><b>Makino, K., Shinagawa, H., Amemura, M., Kawamoto, T., Yamada, M., Nakata, A. (1989).</b> Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins. <i>Journal of Molecular Biology</i> <b>210</b>(3), 551-559</p>
 +
<p><b>Kalogeraki, V. S. and Winans, S. C. (1996).</b> Suicide plasmids containing promoterless reporter genes can simultaneously disrupt and create fusions to target genes of diverse bacteria. <i>Gene</i> <b>188</b>(1), 69-75</p>
 +
 +
<p>Edinburgh 2009 team wiki, <i>http://2009.igem.org/Team:Edinburgh</i>.</p>
 +
<p>Ljubljana 2007 team wiki, <i>http://2007.igem.org/Ljubljana</i>.</p>
 +
<p>UT Austin 2004 team wiki (Registry coliroid page), <i>http://partsregistry.org/Coliroid</i>.</p>
 +
<p>Harvard 2008 team wiki, <i>http://2008.igem.org/Team:Harvard</i>.</p>
 +
<p>EPF Lausanne 2009 team wiki, <i>http://2009.igem.org/Team:EPF-Lausanne</i>.</p>
 +
<p>Tokyo-Nokogen 2009 team wiki, <i>http://2009.igem.org/Team:Tokyo-Nokogen</i>.</p>
 +
<p>Cambridge 2010 team wiki, <i>http://2010.igem.org/Team:Cambridge</i>.</p>
 +
<p>Mexico UNAM-Genomics 2010 team wiki, <i>http://2010.igem.org/Team:UNAM-Genomics_Mexico</i>.</p>
</div>
</div>

Latest revision as of 02:29, 28 October 2010







References


Elowitz, M. B. and S. Leibler (2000). A synthetic oscillatory network of transcriptional regulators. Nature 403(6767): 335-338.

Danino, T., O. Mondragon-Palomino, et al (2009). A synchronized quorum of genetic clocks. Nature 463(7279): 326-330.

Garcia-Ojalvo, J., M. B. Elowitz, et al. (2004). Modeling a synthetic multicellular clock: Repressilators coupled by quorum sensing. Proceedings of the National Academy of Sciences of the United States of America 101(30): 10955-10960.

Seliger, H. H., & McElroy, W. D. (1964). The Colors of Firefly Bioluminescence: Enzyme Configuration and Species Specificity. PNAS 52 (1) 75-81

Branchini, B. R., Southworth, T. L., Khattak, N. F., Michelini, E. & Roda, A. (2005). Red- and green-emitting firefly luciferase mutants for bioluminescent reporter applications. Analytical Biochemistry 345, 140-148.

Branchini, B. R., Ablamsky, D. M., Murtiashaw, M. H., Uzasci, L., Fraga, H. & Southworth, T. L. (2007). Thermostable red and green light-producing firefly luciferase mutants for bioluminescent reporter applications. Analytical Biochemistry 361, 253-262.

Moradi, A., Hosseinkhani, S., Naderi-Manesh, H., Sadeghizadeh, M. & Alipour, B. S. (2009). Effect of Charge Distribution in a Flexible Loop on the Bioluminescence Color of Firefly Luciferases. Biochemistry 48, 575-582.

O'Kane, D. J. & Lee, J. (1985). Chemical characterization of lumazine protein from Photobacterium leiognathi: comparison with lumazine protein from Photobacterium phosphoreum. Biochemistry 24, 1467-1475.

Suadee, C., Nijvipakul, S., et al. (2008). LuxG Is a Functioning Flavin Reductase for Bacterial Luminescence. J. Bacteriol. 190(5): 1531-1538

Fujii, H., Noda, K., Asami, Y., Kuroda, A., Sakata, M. & Tokida, A. (2007). Increase in bioluminescence intensity of firefly luciferase using genetic modification. Analytical Biochemistry 366, 131-136.

Shapirol, E., Lu, C., Baneyx, F. (2009). Design and characterization of novel trypsin-resistant firefly luciferases by site-directed mutagenesis. Protein Eng Des Sel 22(11): 655-663.

Levskaya, A., Chevalier, A. A., Tabor, J. J. & other authors (2005). Synthetic biology: Engineering Escherichia coli to see light. Nature 438, 441-442.

Gambetta, G. A. & Lagarias, J. C. (2001). Genetic engineering of phytochrome biosynthesis in bacteria. Proceedings of the National Academy of Sciences of the United States of America 98, 10566-10571.

Levskaya, A., O. D. Weiner, et al. (2009). Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature Vol 461

Strickland, D., Moffat, K. & Sosnick, T. R. (2008). Light-activated DNA binding in a designed allosteric protein. Proceedings of the National Academy of Sciences 105, 10709-10714.

Schüttrigkeit, T. A., Kompa, C. K., Salomon, M., Rüdiger, W. & Michel-Beyerle, M. E. (2003). Primary photophysics of the FMN binding LOV2 domain of the plant blue light receptor phototropin of Avena sativa. Chemical Physics 294, 501-508.

Wu, Y. I., D. Frey, et al. (2009). A genetically encoded photoactivatable Rac controls the motility of living cells. Nature Vol 461

Hirose, Y., Shimada, T., Narikawa, R., Katayama, M. & Ikeuchi, M. (2008). Cyanobacteriochrome CcaS is the green light receptor that induces the expression of phycobilisome linker protein. Proceedings of the National Academy of Sciences 105, 9528-9533.

Makino, K., Shinagawa, H., Amemura, M., Kawamoto, T., Yamada, M., Nakata, A. (1989). Signal transduction in the phosphate regulon of Escherichia coli involves phosphotransfer between PhoR and PhoB proteins. Journal of Molecular Biology 210(3), 551-559

Kalogeraki, V. S. and Winans, S. C. (1996). Suicide plasmids containing promoterless reporter genes can simultaneously disrupt and create fusions to target genes of diverse bacteria. Gene 188(1), 69-75

Edinburgh 2009 team wiki, http://2009.igem.org/Team:Edinburgh.

Ljubljana 2007 team wiki, http://2007.igem.org/Ljubljana.

UT Austin 2004 team wiki (Registry coliroid page), http://partsregistry.org/Coliroid.

Harvard 2008 team wiki, http://2008.igem.org/Team:Harvard.

EPF Lausanne 2009 team wiki, http://2009.igem.org/Team:EPF-Lausanne.

Tokyo-Nokogen 2009 team wiki, http://2009.igem.org/Team:Tokyo-Nokogen.

Cambridge 2010 team wiki, http://2010.igem.org/Team:Cambridge.

Mexico UNAM-Genomics 2010 team wiki, http://2010.igem.org/Team:UNAM-Genomics_Mexico.

Throughout this wiki there are words in bold that indicate a relevance to human aspects. It will become obvious that human aspects are a part of almost everything in iGEM.