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Team:ETHZ Basel/Internal
From 2010.igem.org
Internal
This section will be removed before wiki-freeze!
Acknowledged problems/incomplete pages
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement#Direction_changes plot (weird for tumbling state)
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement#Algorithm: replace running with directed movement in the image
General remarks
- Protein names - bold or not?
Simona: unbold them Moritz: put them in <var>...</var>, e.g. PIF3, or PhyB.
- Running or directed movement?
Simona: running Moritz: directed movement sounds more scientific.
- chemotaxis pathway vs chemotactic pathway
Simona: chemotaxis pathway
- chemotaxis vs Chemotaxis
Simona: chemotaxis
- E.lemming vs E. lemming
George: It should be E. lemming (compared to E. coli); Simona: E.coli is also E. coli?; Simona: Yes, see Wikipedia...
- E. lemming vs THE E. lemming
George: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified E. coli
- far red light vs far-red light vs any other form..
George: According to Wikipedia: far-red
Suggestions
first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
second paragraph: quite unclear, if possible, add more details & explain more
add a few sentences (and link them) regarding ARL & Safety
50 μm (?) high flow channel; remove question mark
replaced casted with cast as the 3rd form of the verb 'to cast'
replaced increasing the deep of the channel with increasing the depth of the channel
THRESHOLD NOT DEFINED in Delta (initial value - threshold); write one line about the threshold and why it is important
plots might look weird (why in last plot, for CheZ, no line appears, not at 0)?
Moved 'Contact' in the bottom of the page; unimportant
Open Tasks
General
- Movies: George & Luzi Almost done, but needs speech!
- Matlab Toolboxes: Moritz & George
Proofreading
Introduction
- https://2010.igem.org/Team:ETHZ_Basel Please read every text of the teaser.
- https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
Biology & Wet Laboratory
- https://2010.igem.org/Team:ETHZ_Basel/Biology Simona DONE, see Suggestions above
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation Thanuja
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Archean_Light_Receptor Elsa
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety Elsa
Mathematical Modeling
Christoph will do this by Sunday
- https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading Simona DONE
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading Simona DONE, See Suggestions above
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
Information Processing
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing Simona DONE, See Suggestions above
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope Simona DONE, See Suggestions above
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow Simona
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection Thanuja: Done. Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization Thanuja
Achievements
Pick-a-task
- https://2010.igem.org/Team:ETHZ_Basel: George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation: Simona DONE
- https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie: George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology: Simona DONE George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism: George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning: George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation: George DONE
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Archean_Light_Receptor: Image: change font to Trebuchet MS, save as PNG, put Sequence into container, link references
- https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety: finish content
- https://2010.igem.org/Team:ETHZ_Basel/Modeling: Simona DONE
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch: Simona Shorten text
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: Simona DONE
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement: Simona Change font to Verdana, make images sharp (correct size), link references
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined: Simona make coherent
- https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design: George Plots are outdated! Replace with new ones! Status: Calculating...
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing: Simona DONE
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope: Simona DONE
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow:Simona Make paragraphs.
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection: Make paragraphs. Thanuja: Done
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization: Make paragraphs.Thanuja
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller: Simona Check spaces between paragraphs
- https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game: Upload movie to ethzigem10 Youtube account
- https://2010.igem.org/Team:ETHZ_Basel/Achievements: Will we have experimental date? Make otherwise overview of achievements.
- https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox: finish content
- https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox: Arrange examples different. (remove spaces), correct references.
- https://2010.igem.org/Team:ETHZ_Basel/Achievements/Interworking: Simona Finish content and decide upon final title.
- https://2010.igem.org/Team:ETHZ_Basel/Achievements/Simulation: Upload movie to ethzigem10 Youtube account and finish content
- https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria: Thanuja Criteria added. have to check with biology to keep it updated (check list)
- https://2010.igem.org/Team:ETHZ_Basel/Team: Moritz: 350*350px picture; Elsa one or two more sentences.
