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| - | {{ETHZ_Basel10}}
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| - | {{ETHZ_Basel10_Empty}}
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| - | = Internal =
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| - | This section will be removed before wiki-freeze!
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| - |
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| - | = Acknowledged problems/incomplete pages =
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement#Direction_changes plot (weird for tumbling state)
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| - | ** Responsible: Simona
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| - | <br>
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement#Algorithm: replace running with directed movement
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| - |
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| - | = General remarks =
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| - | * '''Protein names''': normally written
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| - | * '''gene names''': italic
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| - | * '''Directed movement''' NOT running, please correct!
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| - | * '''chemotaxis''' pathway NOT Chemotaxis nor chemotactic
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| - | * '''E. lemming''' with space
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| - | * E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified ''E. coli''
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| - | * '''far-red light''', not far red light, please correct!
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| - | * '''internal links''' - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
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| - |
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| - | = Suggestions =
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| - | * We need to be consistent in the use of formal/informal language. what do you decide upon this?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Elsa'''
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| - | first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
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| - | <br>second paragraph: quite unclear, if possible, add more details & explain more
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| - | <br>add a few sentences (and link them) regarding ARL & Safety
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
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| - | 50 μm (?) high flow channel; remove question mark
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
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| - | THRESHOLD NOT DEFINED in ''Delta (initial value - threshold)''; write one line about the threshold and why it is important<br>
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| - | plots might look weird (why in last plot, for CheZ, no line appears, not at 0)?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
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| - | in second part of the page, 'cells with highest score'; define the score
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| - | <br>clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
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| - | added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
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| - | spacing, subheadings & some bullet points); suggesting more images for the user experience part
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
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| - | Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria
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| - | check with biology to keep it updated (check list)
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| - |
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| - | = Teaser & Motivation =
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| - |
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| - | ==Images==
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| - | '''Simona''': Achievements image: increase resolution; Same for first image.<br>
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| - | '''Thanuja''': a better picture to suggest what we have done? any creative ideas to make a better first impression?
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| - | <br>'''Simona''': pictures look very cool; if possible, change the one from 'Information processing'
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| - |
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| - | ==Text==
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| - |
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| - | ===Motivation & Project Idea===
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| - | '''Simona''': E. lemming is the 2010 iGEM project of ETH Zurich! We are controlling the movement of any E. coli cell by hijacking chemotaxis, monitoring its spatial behavior by image processing techniques and directing it towards an user - define target by smart control algorithms! Find out more about our motivation and project idea!
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| - |
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| - | ===E. lemming - The movie===
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| - | '''Simona''': Watch a short animation of E. lemming! Find out the core concepts behind our project and how we combined biology, mathematical modeling and image processing techniques to create E. lemming!
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| - |
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| - | ===Biology & Wet Laboratory===
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| - | '''Simona''': How is it implemented? By coupling the Che proteins of the chemotaxis pathway to a synthetic light - sensitive spatial localization system, their activity can be reversibly controlled. To find out more about E. lemming on the molecular level and to find information regarding the wet laboratory experiments, please visit the Biology & Wet Laboratory section.
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| - |
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| - | ===
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| - |
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| - | ==Motivation==
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| - |
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| - | = General =
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| - | * Movies: '''George & Luzi''' Almost done, but needs speech! '''Elsa'''
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| - | * Matlab Toolboxes: '''Moritz & George'''
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| - |
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| - | = Proofreading =
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| - |
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| - | ===Introduction===
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| - | * https://2010.igem.org/Team:ETHZ_Basel '''EVERYONE''': Please read every text of the teaser and suggest improvements.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation '''EVERYONE''': Please read and suggest improvements.
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| - |
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| - | ===Biology & Wet Laboratory===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation '''Thanuja DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Archean_Light_Receptor '''Elsa'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety '''Elsa'''
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| - |
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| - | ===Mathematical Modeling===
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| - |
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| - | '''Christoph will do this by Sunday'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling : first proofreading '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: first proofreading '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
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| - |
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| - | ===Information Processing===
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection '''Thanuja DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization '''Thanuja DONE'''
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| - |
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| - | ===Achievements===
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| - |
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| - | == Pick-a-task ==
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| - | * https://2010.igem.org/Team:ETHZ_Basel: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology: '''Simona DONE''' '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Archean_Light_Receptor: Image: change font to Trebuchet MS, save as PNG, put Sequence into container, link references '''Elsa'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety: finish content '''Elsa, need help!'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch: '''Simona 1/2 done''' Shorten text
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined: '''Simona''' make coherent
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design: '''George DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope: '''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow:'''Simona DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection'''Thanuja: Done'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization'''Thanuja: Done'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller: '''Simona''' Check spaces between paragraphs
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| - | * https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game: Upload movie to ethzigem10 Youtube account
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements: Will we have experimental date? Make otherwise overview of achievements.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox: finish content
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox: Arrange examples different. (remove spaces), correct references.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Interworking: '''Simona''' Finish content and decide upon final title.
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Simulation: Upload movie to ethzigem10 Youtube account and finish content
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Achievements/Medal_Criteria: '''Thanuja DONE'''
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| - | * https://2010.igem.org/Team:ETHZ_Basel/Team: Moritz: 350*350px picture;
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