Team:ETHZ Basel/Internal

From 2010.igem.org

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=== Introduction ===
=== Introduction ===
* https://2010.igem.org/Team:ETHZ_Basel
* https://2010.igem.org/Team:ETHZ_Basel
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** Responsibility: George
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** Proofreading: Elsa
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** Status: 80%
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** ToDo: change pictures, improve text
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** Suggestions: [[Team:ETHZ_Basel/Internal/TeaserAnimations|see the special section.]]
* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Motivation
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** Responsibility: Simona
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** Proofreading: Thanuja
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* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
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** Responsibility: George
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** Proofreading: Elsa
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** Status: 50%
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** ToDo: improve text, add speech
** Suggestions:
** Suggestions:
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*** Elsa: change background to other color
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*** Jörg: add automated microscope image
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*** Vincent: make chapters, different effect for highlighting of parts
* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Media
* https://2010.igem.org/Team:ETHZ_Basel/Introduction/Media
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** Responsibility: Katharina
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** Proofreading: Elsa
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=== Biology & Wet Laboratory ===
=== Biology & Wet Laboratory ===
* https://2010.igem.org/Team:ETHZ_Basel/Biology
* https://2010.igem.org/Team:ETHZ_Basel/Biology
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** Responsibility: Elsa
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* https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism
* https://2010.igem.org/Team:ETHZ_Basel/Biology/Molecular_Mechanism
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** Responsibility: Elsa
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** Proofreading: Sonja
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* https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning
* https://2010.igem.org/Team:ETHZ_Basel/Biology/Cloning
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** Responsibility: Sonja
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* https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
* https://2010.igem.org/Team:ETHZ_Basel/Biology/Implementation
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** Responsibility: Sonja
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* https://2010.igem.org/Team:ETHZ_Basel/Biology/Archeal_Light_Receptor
* https://2010.igem.org/Team:ETHZ_Basel/Biology/Archeal_Light_Receptor
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** Responsibility: Elsa
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* https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety
* https://2010.igem.org/Team:ETHZ_Basel/Biology/Safety
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** Responsibility: Elsa
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** Proofreading: Christoph
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=== Mathematical Modeling ===
=== Mathematical Modeling ===
* https://2010.igem.org/Team:ETHZ_Basel/Modeling
* https://2010.igem.org/Team:ETHZ_Basel/Modeling
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** Responsibility: Moritz
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** Proofreading: Christoph
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** Suggestions:
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*** Someone: improve language
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Light_Switch
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** Responsibility: Moritz
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** Proofreading: Luzi
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Chemotaxis
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** Responsibility: George
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** Proofreading: Simona
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** Suggestions:
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*** Elsa: link to chemotaxis
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*** Moritz: state that models are based on published models and adapted by us.
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*** Someone: add picture from chemotaxis pathway
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Movement
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** Proofreading: Luzi
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Combined
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** Responsibility: Moritz
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* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
* https://2010.igem.org/Team:ETHZ_Basel/Modeling/Experimental_Design
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** Responsibility: George
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=== Information Processing ===
=== Information Processing ===
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Microscope
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** Responsibility: Moritz (finished)
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** Proofreading: Katharina
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** Suggestions:
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/InformationFlow
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** Responsibility: Moritz (finished)
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** Proofreading: Christoph
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/CellDetection
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** Responsibility: Moritz (finished)
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Visualization
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** Responsibility: Moritz (finished)
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** Proofreading: George
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*** Jörg: add explanation (legend) to the movie.
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Controller
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* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game
* https://2010.igem.org/Team:ETHZ_Basel/InformationProcessing/Game
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=== Achievements ===
=== Achievements ===
* https://2010.igem.org/Team:ETHZ_Basel/Achievements
* https://2010.igem.org/Team:ETHZ_Basel/Achievements
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** Suggestions: make list of achievements and link them.
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/BioBrick_Toolbox
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* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Matlab_Toolbox
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** Responsibility: Moritz
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** Proofreading: George
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*** George: make it shorter.
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Design
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Design
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* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Implementation
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Systems_Implementation
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* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Technical_Standard
* https://2010.igem.org/Team:ETHZ_Basel/Achievements/Technical_Standard
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=== Team ===
=== Team ===
* https://2010.igem.org/Team:ETHZ_Basel/Team
* https://2010.igem.org/Team:ETHZ_Basel/Team
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* https://2010.igem.org/Team:ETHZ_Basel/Team/Photos
* https://2010.igem.org/Team:ETHZ_Basel/Team/Photos
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* https://2010.igem.org/Team:ETHZ_Basel/Team/Acknowledgements
* https://2010.igem.org/Team:ETHZ_Basel/Team/Acknowledgements
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Revision as of 21:11, 25 October 2010

Internal

This section will be removed before wiki-freeze!

DO NOT EDIT NOW!!!

General remarks

  • Protein names: normally written
  • gene names: italic
  • Directed movement NOT running, please correct!
  • chemotaxis pathway NOT Chemotaxis nor chemotactic
  • E. lemming with space
    • E. lemming vs THE E. lemming: E. lemming: Project name (whole assay), The E. lemming: One single genetically modified E. coli
  • far-red light, not far red light, please correct!
  • internal links - we should refer to other internal pages (hyperlinks) where appropriate, inside the paragraphs.
  • in silico & in vivo, not in-silico & in-vivo

Teaser & Animations

  • Drafts of teaser & animation text

Responsibilities, Tasks & Suggestions

Introduction

  • https://2010.igem.org/Team:ETHZ_Basel/Introduction/Movie
    • Responsibility: George
    • Proofreading: Elsa
    • Status: 50%
    • ToDo: improve text, add speech
    • Suggestions:
      • Elsa: change background to other color
      • Jörg: add automated microscope image
      • Vincent: make chapters, different effect for highlighting of parts

Biology & Wet Laboratory

Mathematical Modeling

Information Processing

Achievements

Team

Suggestions

first paragraph, define 'anchor' and 'tumbling' and 'directed movement' before using the terms
second paragraph: quite unclear, if possible, add more details & explain more
add a few sentences (and link them) regarding ARL & Safety

50 μm (?) high flow channel; remove question mark

in second part of the page, 'cells with highest score'; define the score
clearly define the reference used: [1] Stuurman et al. 2007; could not uniquely identify it

Original sentence 'It should be noticed that this signal changes with time constant in the range of hours' rephrased to:'It should be noticed that this signal constantly changes with time in the range of hours.' Revert if meaning changed.

added reference [2]. would be good if a biologist can check if it's the right one. Looks like the page ends abruptly. something like a conclusion perhaps?

spacing, subheadings & some bullet points); suggesting more images for the user experience part

Corrected minor spelling mistakes. Gave names to the 2 steps of the cell detection algorithm. Added subheadings to make it more readable & structured. Revert if necessary.

check with biology to keep it updated (check list)

Add link to Biozentrum Unibas.

Christoph will do this by Sunday

Christoph:

  • first box: E. lemming, these aren't the devices we used for modeling, that is what we model, anchor not necessarily the plasmid
  • too many "in order to"
  • mathematical modeling overview: please rearrange: 1. WHAT complex model set up, consisting of chemotaxis, light, move, implemented and coupled 2. WHY explain support a little bit more
  • Model implementation: tab and text order should be equal; implementation and adaption of literature described ones, movement by our own!

C: give an idea about the complexity, e.g. high number of proteins and interactions; why did we use only Spiro and Mello?; models: text first as it explains the plots; please gibe a clearer description of the plots, for an external person it's almost not understandable

Retrieved from "http://2010.igem.org/Team:ETHZ_Basel/Internal"