Team:ESBS-Strasbourg/Results/Device

From 2010.igem.org

(Difference between revisions)
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</li>
</li>
<li>
<li>
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<p><br/><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team">&nbsp;&nbsp;TEAM</a></p>
+
<p><br/><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team">
 +
&nbsp;&nbsp;TEAM</a></p>
<ul>
<ul>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team">Overview</a></li>
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team">
 +
Overview</a></li>
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#under">
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#under">
Students</a></li>
Students</a></li>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#instructors">
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#advisors">
Advisors</a></li>
Advisors</a></li>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#instructors">
 +
Instructors</a></li>
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#uni">
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#uni">
Strasbourg</a></li>
Strasbourg</a></li>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Team#collaboration">
 +
Collaboration</a></li>
                                
                                
</ul>
</ul>
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<li>
<li>
<p><br />
<p><br />
-
<a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project">&nbsp;&nbsp;PROJECT</a></p>
+
<a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project">
 +
&nbsp;&nbsp;PROJECT</a></p>
<ul>
<ul>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project">Overview</a></li>
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project">
 +
Overview</a></li>
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Strategy">
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Strategy">
Strategy</a></li>
Strategy</a></li>
 +
                                <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/visual">
 +
Visual Description</a></li>
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Application">
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Application">
Application</a></li>
Application</a></li>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Acknowledgment">Acknowledgment</a></li>
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Acknowledgment">
 +
Acknowledgment</a></li>
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Reference">
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Project/Reference">
Reference</a></li>
Reference</a></li>
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</li>
</li>
<li>
<li>
-
<p><br/><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results">&nbsp;&nbsp;RESULTS</a></p>                 
+
<p><br/><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Biobricks">
 +
&nbsp;&nbsp;RESULTS</a></p>                 
                         <ul>
                         <ul>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Biobricks">Biobricks</a></li>
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Biobricks">
 +
Biobricks</a></li>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Assembly">
 +
<font size="3">Biobrick Assembly Technique</font></a></li>
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Characterization">
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Characterization">
Characterization</a></li>
Characterization</a></li>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Modeling">Modeling</a></li>
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Modelling">
-
                                <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Device">Lighting device</a></li>
+
Modeling</a></li>
 +
 
</ul>
</ul>
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</li>
</li>
<li>
<li>
-
<p><br/><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook">&nbsp;&nbsp;NOTEBOOK</a></p>
+
<p><br/><a>
 +
&nbsp;&nbsp;NOTEBOOK</a></p>
                         <ul>
                         <ul>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook/Syntethic">Synthetic Photoreceptors</a></li>
+
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook/Syntethic">
 +
Synthetic Photoreceptors</a></li>
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook/Microfluidics">
                                 <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook/Microfluidics">
Microfluidics</a></li>
Microfluidics</a></li>
-
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook/Labbook">Lab-book</a></li>
+
                                <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Results/Device">Lighting device</a></li>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Notebook/Labbook">
 +
Lab-book</a></li>
</ul>
</ul>
</li>
</li>
 +
 +
<li>
 +
<p><br/><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Humanpractice">
 +
HUMAN PRACTICE</a></p>
 +
                        <ul>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Humanpractice#organisation">
 +
Organisation</a></li>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Humanpractice#survey">
 +
Survey</a></li>
 +
                                <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Humanpractice#video">
 +
The ClpX video</a></li>
 +
                                <li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Humanpractice#game">
 +
The ClpX game</a></li>
 +
<li><a href="http://2010.igem.org/Team:ESBS-Strasbourg/Humanpractice#safety">
 +
Project Safety</a></li>
 +
 +
</ul>
 +
 +
</li>
 +
                 <li class="last">
                 <li class="last">
<p><br />
<p><br />
-
<a href="http://2010.igem.org/Team:ESBS-Strasbourg/Sponsors">&nbsp;&nbsp;SPONSORS</a></p>
+
<a href="http://2010.igem.org/Team:ESBS-Strasbourg/Sponsors">
 +
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;SPONSORS</a></p>
</li>
</li>
</ul>
</ul>
 +
</div>
 +
</div>
</div>
</div>
</div>
</div>
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<tr>
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<div id="leftmenu">
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<td width="160" rowspan=7 bgcolor="#414141" valign="top">
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<td width="180" rowspan=7 bgcolor="#414141" valign="top">
<br>
<br>
-
<div class="heading">System’s modeling</div>
+
<div class="heading">Lighting device</div>
<div class="desc">
<div class="desc">
<br>
<br>
<a href="#Introduction">1. Introduction</a>
<a href="#Introduction">1. Introduction</a>
<br>
<br>
-
<a href="#Behavioral">2. Behavioral model</a>
+
<a href="#Behavioral">2. Printed circuit board</a>
<br>
<br>
-
<a href="#Signalflow">3. Signal flow model</a>
+
<a href="#Signalflow">3. Microcontroller software</a>
<br>
<br>
-
<a href="#Conclusion">4. Conclusion</a>
+
<a href="#Conclusion">4. Computer software</a>
<br>
<br>
</div>
</div>
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<td width="10" rowspan=7 bgcolor="#222222">
</div>
</div>
-
 
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<div id="windowbox" style="position:fixed; top:50%; left:20px; width:11%;">
 +
<span style="color:ivory;">
 +
&nbsp;&nbsp;
 +
<a href="http://2010.igem.org/Team:ESBS-Strasbourg/science">
 +
<img border="0" src="http://2010.igem.org/wiki/images/d/da/ESBS-Strasbourg-Clpx.gif" width="70" height="85" ></a>
 +
<br>
 +
Let me guide you</span>
<td width="800" bgcolor="#414141">
<td width="800" bgcolor="#414141">
<br>
<br>
<br>
<br>
<center>
<center>
-
<font size=+3>System’s modeling</font>
+
<font size=+3>Lighting device</font>
</center>
</center>
 +
<br>
 +
<center><img src="http://2010.igem.org/wiki/images/c/cd/Lightingdevice_top.png" width="450px"></center>
 +
<br>
<br>
<br>
<a name="Introduction"></a>
<a name="Introduction"></a>
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<div class="heading">1. Introduction</div>
<div class="heading">1. Introduction</div>
<div class="desc">
<div class="desc">
 +
<br>
 +
<br>
 +
To make the characterization of our biological system we developped a lighting device which can be controlled from a computer. The goal of this device is to create red and infrared pulses which period and duration are fixed by the user in a computer interface.
 +
<br>
 +
<br>
 +
The lighting part of the device is composed of two parts:
 +
<br>
 +
• A LEDs band which is composed of four red LEDs put alternately with four infrared LEDs and used to enlighten a tube
 +
<br>
 +
• A box subdivided into a 3-by-3 matrix of compartments, each one containing a red and an infrared LED and used to enlighten independently nine biological materials
 +
<br>
 +
<br>
 +
These two parts are represented on the following scheme:
 +
<br>
 +
<br>
 +
<center><img src="http://2010.igem.org/wiki/images/e/e8/Leds_tot.png" width="500px"></center>
 +
<br>
<br>
<br>
</div>
</div>
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<a name="Behavioral"></a>
<a name="Behavioral"></a>
<br>
<br>
-
<div class="heading">2. Behavioral model</div>
+
<div class="heading">2. Printed circuit board</div>
<div class="desc">
<div class="desc">
-
 
+
<br>
 +
<br>
 +
We designed the printed circuit board with Kicad, a free PCB design tool. You can download Kicad at this address:<br>
 +
<a href="http://www.lis.inpg.fr/realise_au_lis/kicad/">http://www.lis.inpg.fr/realise_au_lis/kicad/</a>
 +
<br>
 +
<br>
 +
Here you can download the PCB file of the circuit: <center><a href="http://2010.igem.org/wiki/images/f/f5/LEDs_PCB.zip"><img src="http://2010.igem.org/wiki/images/e/e8/Download_bouton.png"></a></center>
 +
<br>
 +
<br>
 +
The following picture explains the different components used:
 +
<br>
 +
<br>
 +
<center><img src="http://2010.igem.org/wiki/images/0/08/LEDs_PCB_screen.png" width="750px"></center>
 +
<br>
 +
<br>
 +
And here is the list of the corresponding components used:
 +
<br>
 +
<br>
 +
• A1, A2, A3, B1,  B2 , B3, C1,  C2 and C3: LEDs connectors
 +
<br>
 +
• B1: LEDs band connector
 +
<br>
 +
• Q1: quartz 4 MHz
 +
<br>
 +
• PIC: Microchip PIC 18F452
 +
<br>
 +
• MAX: MAX232
 +
<br>
 +
• DB9: DB9 connector
 +
<br>
 +
• PB: reset button
 +
<br>
 +
• P1: power connector (9 V)
 +
<br>
 +
• P2: 78L05L voltage regulator (5 V)
 +
<br>
 +
• R1: LEDs resistors (100 Ω)
 +
<br>
 +
• RC1: resistor (10 kΩ) and capacitor (100 nF) for the reset
 +
<br>
 +
• C1: quartz capacitor (33 pF)
 +
<br>
 +
• C2: power decoupling capacitor (33 nF)
 +
<br>
 +
• C3,C4,C5,C6: MAX232 capacitors (10 µF)
 +
<br>
 +
• C7: 78L05L capacitor (330 nF)
 +
<br>
<br>
<br>
</div>
</div>
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<a name="Signalflow"></a>
<a name="Signalflow"></a>
<br>
<br>
-
<div class="heading">3. Signal flow model</div>
+
<div class="heading">3. Microcontroller software</div>
<div class="desc">
<div class="desc">
-
 
+
<br>
 +
<br>
 +
The microcontroller used is a Microchip pic 18F452 which is easily programmable in C language with MPLAB combined to a C18 compiler. The link between the computer and the microcontroller is carried through the serial port.
 +
<br>
 +
<br>
 +
Here you can download the hex file of the program: <center><a href="http://2010.igem.org/wiki/images/6/63/Pic_LEDs.zip"><img src="http://2010.igem.org/wiki/images/e/e8/Download_bouton.png"></a></center>
 +
<br>
 +
<br>
 +
And here are the source files of the software: <center><a href="http://2010.igem.org/wiki/images/2/2d/Pic_LEDs_sources.zip"><img src="http://2010.igem.org/wiki/images/e/e8/Download_bouton.png"></a></center>
 +
<br>
 +
<br>
</div>
</div>
</td>
</td>
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<a name="Conclusion"></a>
<a name="Conclusion"></a>
<br>
<br>
-
<div class="heading">4. Conclusion</div>
+
<div class="heading">4. Computer software</div>
<div class="desc">
<div class="desc">
 +
<br>
 +
<br>
 +
We developped the computer software with Microsoft Visual C++. You can download Express version at this address:
 +
<br>
 +
<a href="http://msdn.microsoft.com/fr-fr/express/default.aspx">http://msdn.microsoft.com/fr-fr/express/default.aspx</a>
 +
<br>
 +
<br>
 +
The following picture illustrates the software interface:
 +
<br>
 +
<br>
 +
<center><img src="http://2010.igem.org/wiki/images/1/11/Soft_screen.png" width="750px"></center>
 +
<br>
 +
<br>
 +
Here you can download the software: <center><a href="http://2010.igem.org/wiki/images/e/e9/Prog_LEDs.zip"><img src="http://2010.igem.org/wiki/images/e/e8/Download_bouton.png"></a></center>
 +
<br>
 +
<br>
 +
And here are the source files: <center><a href="http://2010.igem.org/wiki/images/7/79/Prog_LEDs_sources.zip"><img src="http://2010.igem.org/wiki/images/e/e8/Download_bouton.png"></a></center>
<br>
<br>
<br>
<br>

Latest revision as of 16:35, 27 October 2010

{|

ESBS - Strasbourg



Lighting device

  
Let me guide you


Lighting device




1. Introduction


To make the characterization of our biological system we developped a lighting device which can be controlled from a computer. The goal of this device is to create red and infrared pulses which period and duration are fixed by the user in a computer interface.

The lighting part of the device is composed of two parts:
• A LEDs band which is composed of four red LEDs put alternately with four infrared LEDs and used to enlighten a tube
• A box subdivided into a 3-by-3 matrix of compartments, each one containing a red and an infrared LED and used to enlighten independently nine biological materials

These two parts are represented on the following scheme:





2. Printed circuit board


We designed the printed circuit board with Kicad, a free PCB design tool. You can download Kicad at this address:
http://www.lis.inpg.fr/realise_au_lis/kicad/

Here you can download the PCB file of the circuit:


The following picture explains the different components used:



And here is the list of the corresponding components used:

• A1, A2, A3, B1, B2 , B3, C1, C2 and C3: LEDs connectors
• B1: LEDs band connector
• Q1: quartz 4 MHz
• PIC: Microchip PIC 18F452
• MAX: MAX232
• DB9: DB9 connector
• PB: reset button
• P1: power connector (9 V)
• P2: 78L05L voltage regulator (5 V)
• R1: LEDs resistors (100 Ω)
• RC1: resistor (10 kΩ) and capacitor (100 nF) for the reset
• C1: quartz capacitor (33 pF)
• C2: power decoupling capacitor (33 nF)
• C3,C4,C5,C6: MAX232 capacitors (10 µF)
• C7: 78L05L capacitor (330 nF)


3. Microcontroller software


The microcontroller used is a Microchip pic 18F452 which is easily programmable in C language with MPLAB combined to a C18 compiler. The link between the computer and the microcontroller is carried through the serial port.

Here you can download the hex file of the program:


And here are the source files of the software:



4. Computer software


We developped the computer software with Microsoft Visual C++. You can download Express version at this address:
http://msdn.microsoft.com/fr-fr/express/default.aspx

The following picture illustrates the software interface:



Here you can download the software:


And here are the source files: