http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&feed=atom&action=history
Team:Davidson-MissouriW/Tools - Revision history
2024-03-28T17:19:35Z
Revision history for this page on the wiki
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Jstevens12 at 22:19, 22 October 2010
2010-10-22T22:19:05Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> <div id="game"> </del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> <a href="http://72.22.219.205/knapsack"></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> <h3>Knapsack Game</h3></del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> </a><A NAME="Knapsack"></del></div></td><td colspan="2"> </td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;"> <p>We designed a game to simulate the knapsack problem. This game is an educational tool that could have a broad impact in educational settings, from middle school to undergraduate courses that discuss NP-complete problems. The game has two modes: tutorial and challenge, each of which asks the player to fill a knapsack of a certain capacity with given weighted items. The tutorial gives tips about the type of problem and only uses six weighted items. The challenge offers no help and asks the player to choose from nine weighted items. </p> </del></div></td><td colspan="2"> </td></tr>
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Jstevens12
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=38272&oldid=prev
Stmeador at 18:45, 30 July 2010
2010-07-30T18:45:19Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <a href="https://static.igem.org/mediawiki/2010/4/4a/ConstructSim.zip"></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <a href="https://static.igem.org/mediawiki/2010/4/4a/ConstructSim.zip"></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <h3><del class="diffchange diffchange-inline">Construct Simulation</del></h3></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <h3><ins class="diffchange diffchange-inline">SimuLox</ins></h3></div></td></tr>
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Stmeador
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=37392&oldid=prev
Ststreb at 15:54, 29 July 2010
2010-07-29T15:54:21Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <a href="https://static.igem.org/mediawiki/2010/4/4a/ConstructSim.zip"><img src="https://static.igem.org/mediawiki/2010/<del class="diffchange diffchange-inline">f</del>/<del class="diffchange diffchange-inline">fe</del>/Davidson-<del class="diffchange diffchange-inline">MissouriWsteph</del>.png" alt="sim" width=355/></a></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <a href="https://static.igem.org/mediawiki/2010/4/4a/ConstructSim.zip"><img src="https://static.igem.org/mediawiki/2010/<ins class="diffchange diffchange-inline">8</ins>/<ins class="diffchange diffchange-inline">87</ins>/Davidson-<ins class="diffchange diffchange-inline">MissouriWconsim</ins>.png" alt="sim" width=355/></a></div></td></tr>
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Ststreb
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=37387&oldid=prev
Stmeador at 15:50, 29 July 2010
2010-07-29T15:50:30Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <div id="mission_box"> <h2> iGEM Davidson – Missouri Western 2010: Tools </h2></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <div id="mission_box"> <h2> iGEM Davidson – Missouri Western 2010: Tools </h2></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <h3>The team has designed several tools to guide and support our iGEM project<del class="diffchange diffchange-inline">"</del>.</h3></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <h3>The team has designed several tools to guide and support our iGEM project.</h3></div></td></tr>
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Stmeador
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=37386&oldid=prev
Stmeador at 15:48, 29 July 2010
2010-07-29T15:48:56Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <div id="mission_box"> <h2> iGEM Davidson – Missouri Western 2010: Tools </h2></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <div id="mission_box"> <h2> iGEM Davidson – Missouri Western 2010: Tools </h2></div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <h3>The team has designed several tools <del class="diffchange diffchange-inline">in conjunction with </del>our <del class="diffchange diffchange-inline">iGem </del>project.</h3></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <h3>The team has designed several tools <ins class="diffchange diffchange-inline">to guide and support </ins>our <ins class="diffchange diffchange-inline">iGEM </ins>project<ins class="diffchange diffchange-inline">"</ins>.</h3></div></td></tr>
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Stmeador
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=37323&oldid=prev
Ststreb at 15:13, 29 July 2010
2010-07-29T15:13:28Z
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Ststreb
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=37320&oldid=prev
Ststreb at 15:12, 29 July 2010
2010-07-29T15:12:09Z
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Ststreb
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=37317&oldid=prev
Ststreb at 15:10, 29 July 2010
2010-07-29T15:10:26Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <a href="http://gcat.davidson.edu/igem10/opt/opt_index.html"><img src="https://static.igem.org/mediawiki/2010/f/ff/Davidson-<del class="diffchange diffchange-inline">MissouriWoptimoose</del>.png" alt="Tools" width=280/></a></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <a href="http://gcat.davidson.edu/igem10/opt/opt_index.html"><img src="https://static.igem.org/mediawiki/2010/f/ff/Davidson-<ins class="diffchange diffchange-inline">MissouriWoptimus</ins>.png" alt="Tools" width=280/></a></div></td></tr>
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Ststreb
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=36811&oldid=prev
Sholle at 07:16, 29 July 2010
2010-07-29T07:16:28Z
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <p>Verifying BioBrick parts can be difficult and tedious by hand. To solve this problem, we have developed a tool to identify BioBrick parts <del class="diffchange diffchange-inline">and devices in </del>a given DNA sequence. When a sequence is entered, the program checks the last archived version of the BioBrick Parts Registry. If your desired part is not found, you can attempt to align the sequence you entered with the part you desire<del class="diffchange diffchange-inline">. Since this search uses a real-time version of the registry, it can potentially find additional parts</del>. When a device is found in your sequence, you can click to view the sequences of individual parts.</p> </div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <p>Verifying BioBrick parts can be difficult and tedious by hand. To solve this problem, we have developed a tool to identify BioBrick parts <ins class="diffchange diffchange-inline">within </ins>a given DNA sequence. When a sequence is entered, the program checks the last archived version of the BioBrick Parts Registry <ins class="diffchange diffchange-inline">and returns the best matched part</ins>. If your desired part is not found, you can attempt to align the sequence you entered with the part you desire. When a device is found in your sequence, you can click to view the sequences of individual parts<ins class="diffchange diffchange-inline">. An alignment of the sequence with the part is presented to the user allowing for easier sequence analysis</ins>.</p> </div></td></tr>
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Sholle
http://2010.igem.org/wiki/index.php?title=Team:Davidson-MissouriW/Tools&diff=36804&oldid=prev
Sholle at 07:11, 29 July 2010
2010-07-29T07:11:58Z
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<tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <div id="Optimoose"></div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div> <div id="Optimoose"></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <h3><del class="diffchange diffchange-inline">The Optimoose</del></h3></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <h3><ins class="diffchange diffchange-inline">Optimus</ins></h3></div></td></tr>
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<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div> <p><del class="diffchange diffchange-inline">The Optimoose </del>is a tool designed to allow the user to evaluate the expression level of a gene sequence in <i>E. coli</i> using either RCBS-PC or the CAI formula. Additionally, the user has the option to optimize or deoptimize the sequence by using one of those two formulas. If the optimized or deoptimized option is selected, the user will be given a new sequence whose codons have been changed to reflect the best, or worst, codons as determined by the selected formula. Assuming the entered sequence is in frame, the amino acid sequence is preserved.</div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div> <p><ins class="diffchange diffchange-inline">Optimus </ins>is a tool designed to allow the user to evaluate the expression level of a gene sequence in <i>E. coli</i> using either RCBS-PC or the CAI formula. Additionally, the user has the option to optimize or deoptimize the sequence by using one of those two formulas. If the optimized or deoptimized option is selected, the user will be given a new sequence whose codons have been changed to reflect the best, or worst, codons as determined by the selected formula. Assuming the entered sequence is in frame, the amino acid sequence is preserved.</div></td></tr>
<tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del class="diffchange diffchange-inline">The Optimoose was designed to allow us to assign </del>a given "weight" to the items<del class="diffchange diffchange-inline">, </del>based on their protein production<del class="diffchange diffchange-inline">, to fill up the knapsack</del>.</p></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div><ins class="diffchange diffchange-inline">Optimus serves as a mechanism by which we can engineer optimized and deoptimized sequences which represent </ins>a given "weight" to the items <ins class="diffchange diffchange-inline">in a knapsack </ins>based on their protein production.</p></div></td></tr>
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Sholle