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Team:Cambridge/References/ProjectBioluminescence/Luciferase
From 2010.igem.org
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{{:Team:Cambridge/Templates/headerMinimalprototype}} | {{:Team:Cambridge/Templates/headerMinimalprototype}} | ||
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{{:Team:Cambridge/Templates/headerbar|colour=#96d446|title=Bioluminescence: Luciferases}} | {{:Team:Cambridge/Templates/headerbar|colour=#96d446|title=Bioluminescence: Luciferases}} | ||
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==Bacterial Bioluminescence== | ==Bacterial Bioluminescence== | ||
| - | + | *[http://arjournals.annualreviews.org/doi/pdf/10.1146/annurev.mi.42.100188.001055?cookieSet=1 paper with hard numbers, pathways] | |
| + | *[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC372803/pdf/microrev00032-0137.pdf The definitive summary paper] | ||
*[[Team:Cambridge/VibrioFischeri| Vibrio Fischeri]] | *[[Team:Cambridge/VibrioFischeri| Vibrio Fischeri]] | ||
*[[Team:Cambridge/VibrioHarvei| Vibrio Harveyi]] | *[[Team:Cambridge/VibrioHarvei| Vibrio Harveyi]] | ||
| + | *[[Team:Cambridge/Phosphoreum| Vibrio Phosphoreum]] | ||
| + | *[[Team:Cambridge/Photorhabdus| Photorhabdus]] | ||
*[[Team:Cambridge/ProjectBioluminescence/Luciferase/WikiGeneticsLuxCDABE| Genetics of luxCDABE (adapted from wikipedia)]] | *[[Team:Cambridge/ProjectBioluminescence/Luciferase/WikiGeneticsLuxCDABE| Genetics of luxCDABE (adapted from wikipedia)]] | ||
| - | *[ | + | *[https://2006.igem.org/Lux_operon| 2006 attempts at BioBricking the lux operon] |
*[[Team:Cambridge/ProjectBioluminescence/Luciferase/Notes| Notes]] | *[[Team:Cambridge/ProjectBioluminescence/Luciferase/Notes| Notes]] | ||
*[http://partsregistry.org/Lux The lux wiki from parts registry] | *[http://partsregistry.org/Lux The lux wiki from parts registry] | ||
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{| class="wikitable" | {| class="wikitable" | ||
| - | !Luciferase!!Colour(at pH7.8)!!λ<sub>max</sub>(nm)(pH 7.8)!!(pH 6.0)!!Base change!!Amino acid change!! | + | !Luciferase!!Colour(at pH7.8)!!λ<sub>max</sub>(nm)!!(pH 7.8)!!(pH 6.0)!!Base change!!Amino acid change!! |
|- | |- | ||
| - | |Genjii||yellow-green||562||609 | + | |Genjii||yellow-green||||562||609 |
|- | |- | ||
| - | |C-M-1||orange||607||614||G857-->A||Ser286-->Asn | + | |C-M-1||orange||||607||614||G857-->A||Ser286-->Asn |
|- | |- | ||
| - | |C-M-2||red||609||611||G976-->A||Gly326-->Ser | + | |C-M-2||red||||609||611||G976-->A||Gly326-->Ser |
|- | |- | ||
| - | |C-M-3||red||612||612||C1297-->T||His433-->Tyr | + | |C-M-3||red||||612||612||C1297-->T||His433-->Tyr |
|- | |- | ||
| - | |C-M-4||yellow-orange||595||609||C1354-->T||Pro452-->Ser | + | |C-M-4||yellow-orange||||595||609||C1354-->T||Pro452-->Ser |
|- | |- | ||
| - | |C-M-6||green||558||558||G715-->A||Val239-->Ile | + | |C-M-6||green||||558||558||G715-->A||Val239-->Ile |
|- | |- | ||
| - | |C-M-11||yellow||565||612 | + | |C-M-11||yellow||||565||612 |
|} | |} | ||
Latest revision as of 12:18, 7 October 2010
Link dumps: Bioluminescence |
Firefly luciferases|
Lucferin recovery|
Light output|
Experiments|
Modelling
Bioluminescence: Luciferases
Mutant luciferase (P. pyralis)
- Mutant Enhanced Photon Initiating Complex (EPIC) Luciferase (P.pyralis) Sequence
- Site-directed mutagenesis of firefly luciferase active site amino acids: a proposed model for bioluminescence color
- Improved practical usefulness of firefly luciferase by gene chimerization and random mutagenesis
Other Insect luciferases
- For colours we could use the click beetle luciferase red or green. They're only at the 'planning' stage though.
Bacterial Bioluminescence
- paper with hard numbers, pathways
- The definitive summary paper
- Vibrio Fischeri
- Vibrio Harveyi
- Vibrio Phosphoreum
- Photorhabdus
- Genetics of luxCDABE (adapted from wikipedia)
- 2006 attempts at BioBricking the lux operon
- Notes
- The lux wiki from parts registry
- NCBI Lux operon sequence
- parts registry lux operon -currently waiting on an email to see how useful/available this part is
- IMPORTANT INFO
- The Photorhabdus luminescens luxCDABE operon in the registry. It's not well characterised
Plasmid experiment
- Vibrio plasmid experiment -possible source of lux operon
- [1] - Transformation protocol for students from basics - includes several plasmids
- Plan
- set plasmid 555 into a BioBrick
- replace the promoter? sensitivity tuners?
- references
Transformation Experiment to test Firefly luciferase in registry
- Firefly luciferase is in the registry as BBa_I712019, and have been sent to us as part of the spring 2010 distribution.
- We need to find a new vector with a bacterial ribosyme binding site, initiator, and a stop codon. Having searched via the catalog in the plasmids section, then in expression plasmids, we have selected a constitutive plasmid:
- The plasmid selected is BBa_J13002, which is a TetR repressed POPS/RIPS generator, again part of the spring 2010 distribution - kit plate 1, well 13B, plasmid pSB1A2. It was proven to work by UMN iGEM 2009.
Wavelengths
548 nm http://pubs.acs.org/doi/pdf/10.1021/bi7015052
613 nm http://www.promega.com/pnotes/85/10904_11/10904_11.pdf
| Luciferase | Colour(at pH7.8) | λmax(nm) | (pH 7.8) | (pH 6.0) | Base change | Amino acid change | |
|---|---|---|---|---|---|---|---|
| Genjii | yellow-green | 562 | 609 | ||||
| C-M-1 | orange | 607 | 614 | G857-->A | Ser286-->Asn | ||
| C-M-2 | red | 609 | 611 | G976-->A | Gly326-->Ser | ||
| C-M-3 | red | 612 | 612 | C1297-->T | His433-->Tyr | ||
| C-M-4 | yellow-orange | 595 | 609 | C1354-->T | Pro452-->Ser | ||
| C-M-6 | green | 558 | 558 | G715-->A | Val239-->Ile | ||
| C-M-11 | yellow | 565 | 612 |
