Team:Calgary/Project/CpxP

From 2010.igem.org

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<i>E coli </i> have several native sigma factors in the genome that are upregulated during envelope stress. Some of the sigma factors include sigma E and sigma 70. These two factors act upon and induce different proteases and chaperones which act to correct the misfolding agent. There is also a new regulon that is currently studied widely, called the Cpx regulon. The Cpx regulon is known to be activated common agents that increase envelope stress response such as high pH which causes dissolving of membrane and ethanol which is an established protein denaturant. The Cpx activation pathway is </p>
<i>E coli </i> have several native sigma factors in the genome that are upregulated during envelope stress. Some of the sigma factors include sigma E and sigma 70. These two factors act upon and induce different proteases and chaperones which act to correct the misfolding agent. There is also a new regulon that is currently studied widely, called the Cpx regulon. The Cpx regulon is known to be activated common agents that increase envelope stress response such as high pH which causes dissolving of membrane and ethanol which is an established protein denaturant. The Cpx activation pathway is </p>
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<a href="http://s872.photobucket.com/albums/ab287/iGEMCalgary_2010/?action=view&current=Cpxmechanism.png" target="_blank"><img src="http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/Cpxmechanism.png" border="0" alt="Cpx PATHWAY"></a>
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<table> <tr><td><a href="http://s872.photobucket.com/albums/ab287/iGEMCalgary_2010/?action=view&current=Cpxmechanism.png" target="_blank"><img src="http://i872.photobucket.com/albums/ab287/iGEMCalgary_2010/Cpxmechanism.png" border="0" alt="Cpx PATHWAY"></a></td>
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<li> Figure illustrates Cpx regulon activation pathway. (Silhavy and Raivio,2001)
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<td>Figure illustrates Cpx regulon activation pathway. In the lack of stress, the CpxP protein is docked on CpxA transmembrane protein. In the presence of misfolded protein in the envelope, CpxP binds to the misfolded protein which allows CpxA to phosphorylate CpxR which acts as a TF for downstream proteases such as DegP.(Silhavy and Raivio,2001)</td>
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</tr>
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</table>
<h3>CpxP</h3>
<h3>CpxP</h3>

Revision as of 19:32, 27 October 2010

Periplasmic Stress Detectors


What causes periplasmic stress?

Periplasmic stress, also known as envelope stress, is triggered by several factors that influence the ability of the bacteria to communicate with other cells through quorum sensing, pathological pathway, pili formation, outer membrane protein formation which plays a role in adhesion of the cells allowing them to form proper colonies and survive. Many stresses in the periplasmic region are triggered by improper formation of outer protein structures such as pili and lipoprotein disruption that reduces pathogenicity of the bacteria.

Team Calgary circuits for periplasmic stress detector



These images illustrate the promoters of choice by team Calgary for detection of periplasmic stress. The promoters of choice include CpxP, CpxR and DegP promoters.

How does a native E. coli cell combat periplasmic stress?

E coli have several native sigma factors in the genome that are upregulated during envelope stress. Some of the sigma factors include sigma E and sigma 70. These two factors act upon and induce different proteases and chaperones which act to correct the misfolding agent. There is also a new regulon that is currently studied widely, called the Cpx regulon. The Cpx regulon is known to be activated common agents that increase envelope stress response such as high pH which causes dissolving of membrane and ethanol which is an established protein denaturant. The Cpx activation pathway is

Cpx PATHWAY Figure illustrates Cpx regulon activation pathway. In the lack of stress, the CpxP protein is docked on CpxA transmembrane protein. In the presence of misfolded protein in the envelope, CpxP binds to the misfolded protein which allows CpxA to phosphorylate CpxR which acts as a TF for downstream proteases such as DegP.(Silhavy and Raivio,2001)

CpxP

CpxR

DegP

Circuit usage and sensitivity

The circuit that will be constructed to detect protein misfolding will have the cpxP promoter. Two other similar circuits will be constructed to compare the activation of cpxP promoter compared to degP and cpxR promoter. All three promoters have the same function: activation of degP which degenerates misfolded proteins in the cell. As it can be seen in the graph below, the cpxP promoter is the most sensitive to the stress. The purpose of this circuit is to detect protein misfolding. For example, cpxP promoter becomes activated under several specific streses: elevation of pH and overexpression envelope proteins such as NlpE. Hence, if periplasmic misfolding occurs in the cell of an E.coli bacteria, the reporter gene, in this case the Red Fluroscent Protein (RFP), will be activated. Hence, the activation of the RFP will be the indication of a periplasmic protein misfolding.


DiGuiseppe, P.A., & Silhavy, T.J. (2003). Signal detection and target gene induction by the cpxra two-component system. Journal of Bacteriology, 185(8), 2436-2436.