BLASTN 2.2.24+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: 94AZHDT9113 Query= Length=389 Score E Sequences producing significant alignments: (Bits) Value lcl|46000 pSB1C3.nCCP 10_premix -- 18..994 of sequence 396 2e-114 lcl|46001 pSB1C3.nCCP 11_premix -- 16..1044 of sequence 257 9e-73 lcl|46002 pSB1C3.nCCP 12_premix -- 25..886 of sequence 255 3e-72 lcl|46003 pSB1C3.nCCP 2_premix -- 21..988 of sequence 257 9e-73 lcl|46004 pSB1C3.nCCP 3_premix -- 13..990 of sequence 257 9e-73 lcl|46005 pSB1C3.nCCP 5_premix -- 16..1012 of sequence 614 5e-180 lcl|46006 pSB1C3.nCCP 8_premix -- 14..994 of sequence 405 3e-117 lcl|46007 pSB1C3.nCCP 9_premix -- 10..302 of sequence 244 2e-69 ALIGNMENTS >lcl|46000 pSB1C3.nCCP 10_premix -- 18..994 of sequence Length=977 Score = 396 bits (214), Expect = 2e-114 Identities = 304/343 (88%), Gaps = 24/343 (6%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 262 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 202 Query 121 ATTCGCGGCCGCTTCTAGATGGCGGGTTACCTGCTGGGTAAGATCAACCTGA-AAGCGCT 179 ||||||||||||||||||| | | ||| ||| || || | |||| | Sbjct 201 ATTCGCGGCCGCTTCTAGA---C------C-TGCA----AAGGCCATGCT-ATAAGCT-T 158 Query 180 GGCAGCACTGGCGAAGAAGATCCTGACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGG 239 | ||| | | || || | |||||||||||||||||||||||||||||||||||| Sbjct 157 CGTT-CACCGACAAACAACA----GACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGG 103 Query 240 CaaaaaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACT 299 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 CAAAAAA--GGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACT 45 Query 300 TCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCG 342 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 44 TCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCG 2 >lcl|46001 pSB1C3.nCCP 11_premix -- 16..1044 of sequence Length=1029 Score = 257 bits (139), Expect = 9e-73 Identities = 141/142 (99%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 261 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 201 Query 121 ATTCGCGGCCGCTTCTAGATGG 142 |||||||||||||||||||||| Sbjct 200 ATTCGCGGCCGCTTCTAGATGG 179 Score = 243 bits (131), Expect = 3e-68 Identities = 136/138 (98%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 205 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 264 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 137 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 80 Query 265 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 20 Query 325 ACTGACTCGCTGCGCTCG 342 |||||||||||||||||| Sbjct 19 ACTGACTCGCTGCGCTCG 2 >lcl|46002 pSB1C3.nCCP 12_premix -- 25..886 of sequence Length=862 Score = 255 bits (138), Expect = 3e-72 Identities = 140/141 (99%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 242 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 182 Query 121 ATTCGCGGCCGCTTCTAGATG 141 ||||||||||||||||||||| Sbjct 181 ATTCGCGGCCGCTTCTAGATG 161 Score = 220 bits (119), Expect = 1e-61 Identities = 127/130 (97%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 205 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 264 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 127 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 70 Query 265 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 10 Query 325 ACTGACTCGC 334 ||||| |||| Sbjct 9 ACTGA-TCGC 1 >lcl|46003 pSB1C3.nCCP 2_premix -- 21..988 of sequence Length=968 Score = 257 bits (139), Expect = 9e-73 Identities = 141/142 (99%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 261 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 201 Query 121 ATTCGCGGCCGCTTCTAGATGG 142 |||||||||||||||||||||| Sbjct 200 ATTCGCGGCCGCTTCTAGATGG 179 Score = 243 bits (131), Expect = 2e-68 Identities = 136/138 (98%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 205 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 264 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 137 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 80 Query 265 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 20 Query 325 ACTGACTCGCTGCGCTCG 342 |||||||||||||||||| Sbjct 19 ACTGACTCGCTGCGCTCG 2 >lcl|46004 pSB1C3.nCCP 3_premix -- 13..990 of sequence Length=978 Score = 257 bits (139), Expect = 9e-73 Identities = 141/142 (99%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 263 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 203 Query 121 ATTCGCGGCCGCTTCTAGATGG 142 |||||||||||||||||||||| Sbjct 202 ATTCGCGGCCGCTTCTAGATGG 181 Score = 243 bits (131), Expect = 3e-68 Identities = 139/142 (97%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 205 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 264 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 139 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 82 Query 265 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 22 Query 325 ACTGACTCGCTGCGCTCGGTCG 346 |||||||||||||||||| ||| Sbjct 21 ACTGACTCGCTGCGCTCG-TCG 1 >lcl|46005 pSB1C3.nCCP 5_premix -- 16..1012 of sequence Length=997 Score = 614 bits (332), Expect = 5e-180 Identities = 339/342 (99%), Gaps = 2/342 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 283 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 223 Query 121 ATTCGCGGCCGCTTCTAGATGGCGGGTTACCTGCTGGGTAAGATCAACCTGAAAGCGCTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 ATTCGCGGCCGCTTCTAGATGGCGGGTTACCTGCTGGGTAAGATCAACCTGAAAGCGCTG 163 Query 181 GCAGCACTGGCGAAGAAGATCCTGACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 162 GCAGCACTGGCGAAGAAGATCCTGACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC 103 Query 241 aaaaaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTT 300 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 AAAAAA--GGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTT 45 Query 301 CGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCG 342 |||||||||||||||||||||||||||||||||||||||||| Sbjct 44 CGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCG 3 >lcl|46006 pSB1C3.nCCP 8_premix -- 14..994 of sequence Length=981 Score = 405 bits (219), Expect = 3e-117 Identities = 310/349 (88%), Gaps = 26/349 (7%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 266 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 206 Query 121 ATTCGCGGCCGCTTCTAGATGGCGGGTTACCTGCTGGGTAAGATCAACCTGA-AAGCGCT 179 |||||||||||||||| | | |||||| ||| || || | |||| | Sbjct 205 ATTCGCGGCCGCTTCT--A------G--ACCTGC----AAAGGCCATGCT-ATAAGC-TT 162 Query 180 GGCAGCACTGGCGA-AGAAGATCCTGACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCG 238 | ||| ||| | || | | ||||||||||||||||||||||||||||||||||| Sbjct 161 CG-TTCAC---CGACA-AACA-ACAGACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCG 108 Query 239 GCaaaaaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTAC 298 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 107 GC-AAAAAA-GGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTAC 50 Query 299 TTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGT 347 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 TTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGT 1 >lcl|46007 pSB1C3.nCCP 9_premix -- 10..302 of sequence Length=293 Score = 244 bits (132), Expect = 2e-69 Identities = 140/143 (97%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 205 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 264 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 143 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 86 Query 265 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 26 Query 325 ACTGACTCGCTGCGCTCGGTCGT 347 |||||||||||||||||| |||| Sbjct 25 ACTGACTCGCTGCGCTCG-TCGT 4 Score = 211 bits (114), Expect = 2e-59 Identities = 116/117 (99%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 25 TTATTATCATGACATTAACCTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATaaa 84 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TTATTATCAAGACATTAACCTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATAAA 234 Query 85 aaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATG 141 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 AAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATG 177