BLASTN 2.2.24+
Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and
Webb Miller (2000), "A greedy algorithm for aligning DNA
sequences", J Comput Biol 2000; 7(1-2):203-14.


RID: A6FZBJB8111


Query=   pSB1K3.nTra10.SOD.h5_premix -- 13..1001 of sequence
Length=989


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

lcl|54775                                                          1500    0.0  

ALIGNMENTS
>lcl|54775 
Length=878

 Score = 1500 bits (812),  Expect = 0.0
 Identities = 828/835 (99%), Gaps = 3/835 (0%)
 Strand=Plus/Plus

Query  1    CTAT-AAAATAGGCGTATCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGC  59
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  44   CTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGC  103

Query  60   TAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATGGCGGGTTACCTGCTGGGTAAGA  119
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  104  TAAGGATGATTTCTGGAATTCGCGGCCGCATCTAGATGGCGGGTTACCTGCTGGGTAAGA  163

Query  120  TCAACCTGAAAGCGCTGGCAGCACTGGCGAAGAAGATCCTGACCGGCGCGACGAAGGCCG  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  TCAACCTGAAAGCGCTGGCAGCACTGGCGAAGAAGATCCTGACCGGCGCGACGAAGGCCG  223

Query  180  TGGCCGTGCTGAAGGGCGACGGCCCAGTGCAGGGCATCATCAATTTCGAGCAGAAGGAAA  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  224  TGGCCGTGCTGAAGGGCGACGGCCCAGTGCAGGGCATCATCAATTTCGAGCAGAAGGAAA  283

Query  240  GTAATGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAAGGCCTGCATGGAT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  GTAATGGACCAGTGAAGGTGTGGGGAAGCATTAAAGGACTGACTGAAGGCCTGCATGGAT  343

Query  300  TCCATGTTCATGAGTTTGGAGATAATACAGCAGGCTGTACCAGTGCAGGTCCTCACTTTA  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  TCCATGTTCATGAGTTTGGAGATAATACAGCAGGCTGTACCAGTGCAGGTCCTCACTTTA  403

Query  360  ATCCTCTATCCAGAAAACACGGTGGGCCAAAGGATGAAGAGAGGCATGTTGGAGACTTGG  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  404  ATCCTCTATCCAGAAAACACGGTGGGCCAAAGGATGAAGAGAGGCATGTTGGAGACTTGG  463

Query  420  GCAATGTGACTGCTGACAAAGATGGTGTGGCCGATGTGTCTATTGAAGGTTCTGTGATCT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  464  GCAATGTGACTGCTGACAAAGATGGTGTGGCCGATGTGTCTATTGAAGGTTCTGTGATCT  523

Query  480  CACTCTCAGGAGACCATGCCATCATTGGCCGCACACTGGTGGTCCATGAAAAAGCAGATG  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  524  CACTCTCAGGAGACCATGCCATCATTGGCCGCACACTGGTGGTCCATGAAAAAGCAGATG  583

Query  540  ACTTGGGCAAAGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCTGGAAGTCGTTTGG  599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  584  ACTTGGGCAAAGGTGGAAATGAAGAAAGTACAAAGACAGGAAACGCTGGAAGTCGTTTGG  643

Query  600  CTTGTGGTGTAATTGGGATCGCCCAAACCGGCCATCACCATCATCACCACACCGGTTAAT  659
            ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct  644  CTTGTGGTGTAATTGGGATCGCCCAAACCGGCCATCATCATCATCATCATACCGGTTAAT  703

Query  660  ACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTCACCACCCTGCCCTT  717
            ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct  704  ACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAAACGGGCAAGGTGTCACCACCCTGCCCTT  763

Query  718  TTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGC  777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  764  TTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGC  823

Query  778  TGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAAT  832
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  824  TGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAAT  878