BLASTN 2.2.24+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: 94AYJ3MJ112 Query= Length=368 Score E Sequences producing significant alignments: (Bits) Value lcl|34480 pSB1C3.nCCP 10_premix -- 18..994 of sequence 403 1e-116 lcl|34481 pSB1C3.nCCP 11_premix -- 16..1044 of sequence 575 2e-168 lcl|34482 pSB1C3.nCCP 12_premix -- 25..886 of sequence 435 3e-126 lcl|34483 pSB1C3.nCCP 2_premix -- 21..988 of sequence 575 2e-168 lcl|34484 pSB1C3.nCCP 3_premix -- 13..990 of sequence 575 2e-168 lcl|34485 pSB1C3.nCCP 5_premix -- 16..1012 of sequence 257 9e-73 lcl|34486 pSB1C3.nCCP 8_premix -- 14..994 of sequence 412 2e-119 lcl|34487 pSB1C3.nCCP 9_premix -- 10..302 of sequence 414 1e-120 ALIGNMENTS >lcl|34480 pSB1C3.nCCP 10_premix -- 18..994 of sequence Length=977 Score = 403 bits (218), Expect = 1e-116 Identities = 295/329 (89%), Gaps = 17/329 (5%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 262 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 202 Query 121 ATTCGCGGCCGCTTCTAGATGGTTTCTC-GTCGCC--GCCGTC-G-TCGCGGTGGAC-GT 174 ||||||||||||||||||| | | | ||| || | | | || | || | Sbjct 201 ATTCGCGGCCGCTTCTAGACC-TG-CAAAG--GCCATGCTATAAGCTT-CGTTC-ACCGA 148 Query 175 CGC-CGTC-GCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCA 232 | | | | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 147 CAAACAACAG-ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCA 91 Query 233 AGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGG 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90 AGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGG 31 Query 293 CTTCCTCGCTCACTGACTCGCTGCGCTCG 321 ||||||||||||||||||||||||||||| Sbjct 30 CTTCCTCGCTCACTGACTCGCTGCGCTCG 2 >lcl|34481 pSB1C3.nCCP 11_premix -- 16..1044 of sequence Length=1029 Score = 575 bits (311), Expect = 2e-168 Identities = 318/321 (99%), Gaps = 2/321 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 261 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 201 Query 121 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGTGGACGTCGCCGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGTGGACGTCGCCGT 141 Query 181 CGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 140 CGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTCA 83 Query 241 CCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 CCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCG 23 Query 301 CTCACTGACTCGCTGCGCTCG 321 ||||||||||||||||||||| Sbjct 22 CTCACTGACTCGCTGCGCTCG 2 >lcl|34482 pSB1C3.nCCP 12_premix -- 25..886 of sequence Length=862 Score = 435 bits (235), Expect = 3e-126 Identities = 290/314 (92%), Gaps = 14/314 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 242 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 182 Query 121 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCC-GCCGTCGTCGCGGTGGACGTCGCCG 179 ||||||||||||||||||||| | | |||| | | |||||| ||| | | | Sbjct 181 ATTCGCGGCCGCTTCTAGATG-TA-CG-GTCGTAAGAAG-CGTCGCCA---ACG-C-C-G 132 Query 180 TCGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTC 239 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 131 TCGTACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTC 74 Query 240 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 73 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 14 Query 300 GCTCACTGACTCGC 313 ||||||||| |||| Sbjct 13 GCTCACTGA-TCGC 1 >lcl|34483 pSB1C3.nCCP 2_premix -- 21..988 of sequence Length=968 Score = 575 bits (311), Expect = 2e-168 Identities = 318/321 (99%), Gaps = 2/321 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 261 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 201 Query 121 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGTGGACGTCGCCGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGTGGACGTCGCCGT 141 Query 181 CGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 140 CGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTCA 83 Query 241 CCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 82 CCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCG 23 Query 301 CTCACTGACTCGCTGCGCTCG 321 ||||||||||||||||||||| Sbjct 22 CTCACTGACTCGCTGCGCTCG 2 >lcl|34484 pSB1C3.nCCP 3_premix -- 13..990 of sequence Length=978 Score = 575 bits (311), Expect = 2e-168 Identities = 321/325 (98%), Gaps = 3/325 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 263 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 203 Query 121 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGTGGACGTCGCCGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 202 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCCGCCGTCGTCGCGGTGGACGTCGCCGT 143 Query 181 CGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCA 240 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 142 CGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTCA 85 Query 241 CCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 CCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCG 25 Query 301 CTCACTGACTCGCTGCGCTCGGTCG 325 ||||||||||||||||||||| ||| Sbjct 24 CTCACTGACTCGCTGCGCTCG-TCG 1 >lcl|34485 pSB1C3.nCCP 5_premix -- 16..1012 of sequence Length=997 Score = 257 bits (139), Expect = 9e-73 Identities = 141/142 (99%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 283 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 223 Query 121 ATTCGCGGCCGCTTCTAGATGG 142 |||||||||||||||||||||| Sbjct 222 ATTCGCGGCCGCTTCTAGATGG 201 Score = 243 bits (131), Expect = 2e-68 Identities = 136/138 (98%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 184 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 243 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 138 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 81 Query 244 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 21 Query 304 ACTGACTCGCTGCGCTCG 321 |||||||||||||||||| Sbjct 20 ACTGACTCGCTGCGCTCG 3 >lcl|34486 pSB1C3.nCCP 8_premix -- 14..994 of sequence Length=981 Score = 412 bits (223), Expect = 2e-119 Identities = 299/333 (89%), Gaps = 15/333 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 266 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 206 Query 121 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCC--GCCGT-CGTC-GCGGTGGA-CGTC 175 ||||||||||||||||||| | | ||| || | | | | || | || | Sbjct 205 ATTCGCGGCCGCTTCTAGA--CCTGC-AAAGGCCATGCTATAAG-CTTC-GTTCACCGAC 151 Query 176 -GCCGTC-GCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAA 233 | | | |||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 150 AAACAACAG-ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAA 94 Query 234 GGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGC 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93 GGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGC 34 Query 294 TTCCTCGCTCACTGACTCGCTGCGCTCGGTCGT 326 ||||||||||||||||||||||||||||||||| Sbjct 33 TTCCTCGCTCACTGACTCGCTGCGCTCGGTCGT 1 >lcl|34487 pSB1C3.nCCP 9_premix -- 10..302 of sequence Length=293 Score = 414 bits (224), Expect = 1e-120 Identities = 279/303 (92%), Gaps = 14/303 (4%) Strand=Plus/Minus Query 25 TTATTATCATGACATTAACCTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATaaa 84 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TTATTATCAAGACATTAACCTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATAAA 234 Query 85 aaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATGGTT 144 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 233 AAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATG-TA 175 Query 145 TCTCGTCGCC-GCCGTCGTCGCGGTGGACGTCGCCGTCGCACCGGTTAATACTAGTAGCG 203 | |||| | | |||||| ||| | | |||| |||||||||||||||||||| Sbjct 174 -CG-GTCGTAAGAAG-CGTCGCCA---ACG-C-C-GTCGTACCGGTTAATACTAGTAGCG 124 Query 204 GCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAA 263 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 123 GCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAA 66 Query 264 ACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCGGT 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 65 ACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCG-T 7 Query 324 CGT 326 ||| Sbjct 6 CGT 4