BLASTN 2.2.24+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: A5X9KWDR114 Query= pSB1A2.RBS.yCCS 4_premix -- 15..982 of sequence Length=968 Score E Sequences producing significant alignments: (Bits) Value lcl|26483 1764 0.0 ALIGNMENTS >lcl|26483 Length=1018 Score = 1764 bits (955), Expect = 0.0 Identities = 964/968 (99%), Gaps = 2/968 (0%) Strand=Plus/Plus Query 2 AAAATAGGCGTATCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGG 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 AAAATAGGCGTATCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGG 108 Query 62 ATGATTTCTGGAATTCGCGGCCGCTTCTAGAGAAAGAGGAGAAATACTAGATGGCCGGCA 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 ATGATTTCTGGAATTCGCGGCCGCTTCTAGAGAAAGAGGAGAAATACTAGATGGCCGGCA 168 Query 122 CCACGAACGATACATACGAGGCTACTTATGCCATTCCCATGCACTGTGAAAATTGCGTGA 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 CCACGAACGATACATACGAGGCTACTTATGCCATTCCCATGCACTGTGAAAATTGCGTGA 228 Query 182 ATGATATAAAGGCGTGCCTAAAAAATGTCCCAGGAATCAATTCATTGAATTTCGATATAG 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 ATGATATAAAGGCGTGCCTAAAAAATGTCCCAGGAATCAATTCATTGAATTTCGATATAG 288 Query 242 AGCAACAAATAATGAGCGTGGAAAGCTCAGTAGCCCCTTCAACTATCATCAACACCTTGC 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 AGCAACAAATAATGAGCGTGGAAAGCTCAGTAGCCCCTTCAACTATCATCAACACCTTGC 348 Query 302 GAAACTGCGGTAAAGACGCCATCATAAGAGGCGCCGGGAAGCCGAACTCTTCCGCGGTCG 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GAAACTGCGGTAAAGACGCCATCATAAGAGGCGCCGGGAAGCCGAACTCTTCCGCGGTCG 408 Query 362 CTATCTTAGAGACCTTTCAAAAATATACTATAGACCAGAAAAAGGACACCGCCGTGAGGG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 CTATCTTAGAGACCTTTCAAAAATATACTATAGACCAGAAAAAGGACACCGCCGTGAGGG 468 Query 422 GCCTAGCAAGAATCGTTCAGGTTGGAGAGAATAAGACTCTTTTTGACATCACTGTAAATG 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 GCCTAGCAAGAATCGTTCAGGTTGGAGAGAATAAGACTCTTTTTGACATCACTGTAAATG 528 Query 482 GCGTCCCAGAGGCGGGAAATTACCACGCCAGCATTCACGAGAAAGGCGACGTCTCCAAGG 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 GCGTCCCAGAGGCGGGAAATTACCACGCCAGCATTCACGAGAAAGGCGACGTCTCCAAGG 588 Query 542 GCGTGGAATCTACTGGTAAAGTTTGGCACAAGTTCGACGAACCCATTGAATGCTTCAACG 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 GCGTGGAATCTACTGGTAAAGTTTGGCACAAGTTCGACGAACCCATTGAATGCTTCAACG 648 Query 602 AGAGTGATTTGGGCAAGAACTTGTACAGTGGGAAGACCTTTCTGAGCGCTCCCTTGCCAA 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 649 AGAGTGATTTGGGCAAGAACTTGTACAGTGGGAAGACCTTTCTGAGCGCTCCCTTGCCAA 708 Query 662 CATGGCAACTTATCGGCCGCAGCTTTGTCATTTCCAAGTCTCTGAACCACCCAGAACACG 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 709 CATGGCAACTTATCGGCCGCAGCTTTGTCATTTCCAAGTCTCTGAACCACCCAGAAAACG 768 Query 722 AGCCTTCCTCCGTTAAGGACTACTCATTTCTGGGAGTCATTGCGAGAAGCGCTGGTGTGT 781 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 769 AGCCTTCCTCCGTTAAGGACTACTCATTTCTGGGAGTCATTGCGAGAAGCGCTGGTGTGT 828 Query 782 GGGAAAATAATAAACAAGTGTGTGCGTGTACCGGAA-GACTGTTTGGGAAGAGAGAAAAG 840 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 829 GGGAAAATAATAAACAAGTGTGTGCGTGTACCGGAAAGACTGTTTGGGAAGAGAGAAAAG 888 Query 841 ATGCCTTGGCCAACAACATCAAAACCGGTTAATACTAGTAGCGGCCGCCTGCACGCTTCC 900 |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 889 ATGCCTTGGCCAACAACATCAAAACCGGTTAATACTAGTAGCGGCCGC-TGCAGGCTTCC 947 Query 901 TCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 TCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCA 1007 Query 961 AAGGCGGT 968 |||||||| Sbjct 1008 AAGGCGGT 1015