BLASTN 2.2.24+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. RID: 94AZ0EK4113 Query= Length=359 Score E Sequences producing significant alignments: (Bits) Value lcl|29660 pSB1C3.nCCP 10_premix -- 18..994 of sequence 440 8e-128 lcl|29661 pSB1C3.nCCP 11_premix -- 16..1044 of sequence 455 3e-132 lcl|29662 pSB1C3.nCCP 12_premix -- 25..886 of sequence 536 8e-157 lcl|29663 pSB1C3.nCCP 2_premix -- 21..988 of sequence 455 3e-132 lcl|29664 pSB1C3.nCCP 3_premix -- 13..990 of sequence 457 8e-133 lcl|29665 pSB1C3.nCCP 5_premix -- 16..1012 of sequence 255 3e-72 lcl|29666 pSB1C3.nCCP 8_premix -- 14..994 of sequence 449 1e-130 lcl|29667 pSB1C3.nCCP 9_premix -- 10..302 of sequence 516 4e-151 ALIGNMENTS >lcl|29660 pSB1C3.nCCP 10_premix -- 18..994 of sequence Length=977 Score = 440 bits (238), Expect = 8e-128 Identities = 298/324 (91%), Gaps = 16/324 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 321 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 262 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 202 Query 121 ATTCGCGGCCGCTTCTAGA--TGTAC-GGTC--G-TAAGAAGCGTCGC-CAACG-C---C 169 ||||||||||||||||||| || | || | | || |||| ||| || || | | Sbjct 201 ATTCGCGGCCGCTTCTAGACCTGCAAAGGCCATGCTAT-AAGCTTCGTTCACCGACAAAC 143 Query 170 GTC-GTACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTG 228 | | |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 142 AACAG-ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTG 86 Query 229 TCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCC 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 TCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCC 26 Query 289 TCGCTCACTGACTCGCTGCGCTCG 312 |||||||||||||||||||||||| Sbjct 25 TCGCTCACTGACTCGCTGCGCTCG 2 >lcl|29661 pSB1C3.nCCP 11_premix -- 16..1044 of sequence Length=1029 Score = 455 bits (246), Expect = 3e-132 Identities = 299/322 (92%), Gaps = 13/322 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 261 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 201 Query 121 ATTCGCGGCCGCTTCTAGATG-TA-CG-GTCGTAAGAAG-CGTCGCCA---ACG-C-C-G 170 ||||||||||||||||||||| | | |||| | | |||||| ||| | | | Sbjct 200 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCC-GCCGTCGTCGCGGTGGACGTCGCCG 142 Query 171 TCGTACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTC 230 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 141 TCGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTC 84 Query 231 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 24 Query 291 GCTCACTGACTCGCTGCGCTCG 312 |||||||||||||||||||||| Sbjct 23 GCTCACTGACTCGCTGCGCTCG 2 >lcl|29662 pSB1C3.nCCP 12_premix -- 25..886 of sequence Length=862 Score = 536 bits (290), Expect = 8e-157 Identities = 300/304 (98%), Gaps = 3/304 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 242 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 182 Query 121 ATTCGCGGCCGCTTCTAGATGTACGGTCGTAAGAAGCGTCGCCAACGCCGTCGTACCGGT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATTCGCGGCCGCTTCTAGATGTACGGTCGTAAGAAGCGTCGCCAACGCCGTCGTACCGGT 122 Query 181 TAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCACCCTGC 240 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 TAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTCACCACCCTGC 64 Query 241 CCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGAC 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGA- 5 Query 301 TCGC 304 |||| Sbjct 4 TCGC 1 >lcl|29663 pSB1C3.nCCP 2_premix -- 21..988 of sequence Length=968 Score = 455 bits (246), Expect = 3e-132 Identities = 299/322 (92%), Gaps = 13/322 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 261 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 201 Query 121 ATTCGCGGCCGCTTCTAGATG-TA-CG-GTCGTAAGAAG-CGTCGCCA---ACG-C-C-G 170 ||||||||||||||||||||| | | |||| | | |||||| ||| | | | Sbjct 200 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCC-GCCGTCGTCGCGGTGGACGTCGCCG 142 Query 171 TCGTACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTC 230 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 141 TCGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTC 84 Query 231 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 24 Query 291 GCTCACTGACTCGCTGCGCTCG 312 |||||||||||||||||||||| Sbjct 23 GCTCACTGACTCGCTGCGCTCG 2 >lcl|29664 pSB1C3.nCCP 3_premix -- 13..990 of sequence Length=978 Score = 457 bits (247), Expect = 8e-133 Identities = 302/326 (92%), Gaps = 14/326 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 263 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 203 Query 121 ATTCGCGGCCGCTTCTAGATG-TA-CG-GTCGTAAGAAG-CGTCGCCA---ACG-C-C-G 170 ||||||||||||||||||||| | | |||| | | |||||| ||| | | | Sbjct 202 ATTCGCGGCCGCTTCTAGATGGTTTCTCGTCGCC-GCCGTCGTCGCGGTGGACGTCGCCG 144 Query 171 TCGTACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTC 230 ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 143 TCGCACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTGTC 86 Query 231 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 ACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTC 26 Query 291 GCTCACTGACTCGCTGCGCTCGGTCG 316 |||||||||||||||||||||| ||| Sbjct 25 GCTCACTGACTCGCTGCGCTCG-TCG 1 >lcl|29665 pSB1C3.nCCP 5_premix -- 16..1012 of sequence Length=997 Score = 255 bits (138), Expect = 3e-72 Identities = 140/141 (99%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 283 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 223 Query 121 ATTCGCGGCCGCTTCTAGATG 141 ||||||||||||||||||||| Sbjct 222 ATTCGCGGCCGCTTCTAGATG 202 Score = 243 bits (131), Expect = 2e-68 Identities = 136/138 (98%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 175 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTGTCACCA 234 |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 138 ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGC-AAAAAA-GGGCAAGGTGTCACCA 81 Query 235 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 CCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCCTCGCTC 21 Query 295 ACTGACTCGCTGCGCTCG 312 |||||||||||||||||| Sbjct 20 ACTGACTCGCTGCGCTCG 3 >lcl|29666 pSB1C3.nCCP 8_premix -- 14..994 of sequence Length=981 Score = 449 bits (243), Expect = 1e-130 Identities = 303/329 (92%), Gaps = 16/329 (4%) Strand=Plus/Minus Query 1 TGCCACTTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 60 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 TGCCACCTGACGTCTAAGAAACCATTATTATCATGACATTAACCTATAAAAATAGGCGTA 266 Query 61 TCACGAGGCAGAATTTCAGATaaaaaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TCACGAGGCAGAATTTCAGATAAAAAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGA 206 Query 121 ATTCGCGGCCGCTTCTAGA--TGTAC-GGTC--G-TAAGAAGCGTCGC-CAACG-C---C 169 ||||||||||||||||||| || | || | | || |||| ||| || || | | Sbjct 205 ATTCGCGGCCGCTTCTAGACCTGCAAAGGCCATGCTAT-AAGCTTCGTTCACCGACAAAC 147 Query 170 GTC-GTACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCaaaaaaaCGGGCAAGGTG 228 | | |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 146 AACAG-ACCGGTTAATACTAGTAGCGGCCGCTGCAGTCCGGCAAAAAA--GGGCAAGGTG 90 Query 229 TCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCC 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89 TCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGATTACTTCGCGTTATGCAGGCTTCC 30 Query 289 TCGCTCACTGACTCGCTGCGCTCGGTCGT 317 ||||||||||||||||||||||||||||| Sbjct 29 TCGCTCACTGACTCGCTGCGCTCGGTCGT 1 >lcl|29667 pSB1C3.nCCP 9_premix -- 10..302 of sequence Length=293 Score = 516 bits (279), Expect = 4e-151 Identities = 289/293 (98%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 25 TTATTATCATGACATTAACCTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATaaa 84 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TTATTATCAAGACATTAACCTATAAAAATAGGCGTATCACGAGGCAGAATTTCAGATAAA 234 Query 85 aaaaaTCCTTAGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATGTAC 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 AAAAATCCTTAGCTTTCGCTAAGGATGATTTCTGGAATTCGCGGCCGCTTCTAGATGTAC 174 Query 145 GGTCGTAAGAAGCGTCGCCAACGCCGTCGTACCGGTTAATACTAGTAGCGGCCGCTGCAG 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 173 GGTCGTAAGAAGCGTCGCCAACGCCGTCGTACCGGTTAATACTAGTAGCGGCCGCTGCAG 114 Query 205 TCCGGCaaaaaaaCGGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGA 264 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 TCCGGCAAAAAA--GGGCAAGGTGTCACCACCCTGCCCTTTTTCTTTAAAACCGAAAAGA 56 Query 265 TTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGT 317 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 55 TTACTTCGCGTTATGCAGGCTTCCTCGCTCACTGACTCGCTGCGCTCG-TCGT 4